View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17079_high_13 (Length: 340)
Name: NF17079_high_13
Description: NF17079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17079_high_13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 29106349 - 29106155
Alignment:
| Q |
146 |
ttaaggttaatctctgtttatgaagtatgattttggaatgaaagaaaatattgcaagaggaaggagattgctaatttttgaggggttggttacttactta |
245 |
Q |
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| T |
29106349 |
ttaaggttaatctctgttcatgaagtatgattttggaatgaaaaaaaatattgcaagaggaaggagattgctaatttttgaggggttggttacttactta |
29106250 |
T |
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| Q |
246 |
atctgctttttcaattaacaggttttagatttagattagattgattaatgtaaataacctttatgaggttttgttgttgattatgtttacattaa |
340 |
Q |
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| T |
29106249 |
atctgctttttcaattaacaggttttagatttagattagattgattaatgtaaataacctttatgaggttttgttgttgattatgtttacattaa |
29106155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 29106476 - 29106390
Alignment:
| Q |
22 |
catcatcatcaatacagtgttaaacatcatcaacaacataaacacacttagacagtgtttggtaacacttaattcttaattaggatg |
108 |
Q |
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| T |
29106476 |
catcatcatcaatacagtgttaaacatcatcaacaacataaacacacttagccagtgtttggtaacacttaattcttaattaggatg |
29106390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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