View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17079_high_15 (Length: 332)
Name: NF17079_high_15
Description: NF17079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17079_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 21345832 - 21346142
Alignment:
| Q |
1 |
attccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattcatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21345832 |
attccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgcatcattcatggat |
21345931 |
T |
|
| Q |
101 |
tttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21345932 |
tttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcatctgg |
21346031 |
T |
|
| Q |
201 |
agaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21346032 |
agaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaatc |
21346131 |
T |
|
| Q |
301 |
ctttgatgatg |
311 |
Q |
| |
|
||||||||||| |
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| T |
21346132 |
ctttgatgatg |
21346142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 22563 - 22872
Alignment:
| Q |
1 |
attccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattcatggat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
22563 |
attccaccacatgaatcataa-gtataacagaaaagcagtccatatgcaatcaacttccagcgtattctctgtaaaattcttgacgaatcattcatggat |
22661 |
T |
|
| Q |
101 |
tttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctgg |
200 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22662 |
tttaataaaatggttcatactcgcgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctgg |
22761 |
T |
|
| Q |
201 |
agaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22762 |
agaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaatc |
22861 |
T |
|
| Q |
301 |
ctttgatgatg |
311 |
Q |
| |
|
||||||||||| |
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|
| T |
22862 |
ctttgatgatg |
22872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 29380915 - 29381216
Alignment:
| Q |
9 |
acatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattcatggattttaataa |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
29380915 |
acatgaatcataa-gtataacagaaaagcagtccatatgcaatcgacttccagcgtattctcggtaaaattcttgacaaatcattcatggattttaataa |
29381013 |
T |
|
| Q |
109 |
aatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctggagaattct |
208 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29381014 |
aatggctcatactcacgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctggagaattct |
29381113 |
T |
|
| Q |
209 |
ccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaatcctttgatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29381114 |
ccaaggcgcgcttttctgactccaaaacagttactttatcatctgcacaatgcaaaaaagtgaaacagattcaaactttgtaaacctaaatcctttgatg |
29381213 |
T |
|
| Q |
309 |
atg |
311 |
Q |
| |
|
||| |
|
|
| T |
29381214 |
atg |
29381216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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