View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17079_high_1_N (Length: 465)
Name: NF17079_high_1_N
Description: NF17079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17079_high_1_N |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 465
Target Start/End: Original strand, 32164486 - 32164937
Alignment:
| Q |
14 |
gagatggacatcatcaatactacacatgtcaatgtggcagtttgatcatatctacttttttcatgatcgtgtgtgatcataaagaaaaattaccttctta |
113 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32164486 |
gagatggacgtcaacaatactacacatgtcaatgtggcagtttgatcatatctactttgctcatgatcgtgtgtgatcataaagaaaaattaccttctta |
32164585 |
T |
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| Q |
114 |
acaagcagctggactggttttataatcaccctaccgcagatgtgcatgttctgaaattgagtcttgtaaagctggagataaccgttcaggcataagaatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
32164586 |
acaagcagctggactggttttataatcaccctaccggagatgtgcatgttctgaaaatgagtcttgtaaagctggagataaccgttcaggcataagattc |
32164685 |
T |
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| Q |
214 |
gaagagcttggcaggagctgatgggtccgaggaggtaaagtgaccaaaagatcagcagagttagtaaatggccttgtggtagaagcaagattgtctagct |
313 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32164686 |
gaagagcttggcagaagctgatgggttcgaggaggtaaagtgaccaaaagatcagcagagttagtaaatggccttgtagtagaagcaagattgtctagct |
32164785 |
T |
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| Q |
314 |
cgagagtcaataataactcattgagctttcatatactcgacttgaagacttgactctaagagtttacttaatataaagaaacgtattaatgatggactcg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32164786 |
cgagagtcaataataactcattgagctttcatatactcgacttgaagacttgactctaagagtttacttaatataaagaaacgtattaatgatggactcg |
32164885 |
T |
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| Q |
414 |
taagagaacagtggcaacatggacatattctgtgttagggtgattatggaag |
465 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32164886 |
taagagaacagtggcaacatggacataatctgtgttagggtgattatggaag |
32164937 |
T |
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