View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17079_high_23 (Length: 304)
Name: NF17079_high_23
Description: NF17079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17079_high_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 55424818 - 55424525
Alignment:
| Q |
11 |
tagctgttgcgttcttttttctcacattctttttcatgttccccattgcaatagtacaaggtcttgcaagtcttgatggaatccataaagcagcaccatg |
110 |
Q |
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| T |
55424818 |
tagctgttgcgttcttttttctcacattctttttcatgatccccattgcaatagtacaaggtcttgcaagtcttgatggaatccagaaagcagcaccatg |
55424719 |
T |
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| Q |
111 |
gttgaatccccttgttagtgagtaagtctaatctcaaagttggatctctggagttatgattctatccgcattcatcacttgattttatttatttgaattt |
210 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55424718 |
gttgaatccccttgttcgtgtgtaagtctaatctcaaagttggatctctggagttatgattctatccgcattcatcacttgattttatttatttgaattt |
55424619 |
T |
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| Q |
211 |
actttattgtgcagccctgttgttaagtcattcattcaaggttttctacccggtattgtattgaagctttttcttatctttctgccaacaatat |
304 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55424618 |
actttattgtgcagccctgttgttatgtcattcattcaaggttttctacccggtattgtattgaagctttttcttatctttctgccaacaatat |
55424525 |
T |
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