View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17079_high_4 (Length: 394)
Name: NF17079_high_4
Description: NF17079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17079_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 36 - 372
Target Start/End: Original strand, 35293293 - 35293631
Alignment:
| Q |
36 |
aaatggtggctttgtcttggccaaaatcaaatggattatggatgttgtcaaaatgtgttgttcatatgtcaatgaagcacttgaattactaaaa--agta |
133 |
Q |
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| T |
35293293 |
aaatggtggctttgtcttggccaaaatcaaatggattatggatgttgtcaaaatgtgttgttcatatgtcaatgaagcacttgaattactaaaaaaagta |
35293392 |
T |
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| Q |
134 |
catccatacataaatgactataatttataatagttttaaacaaacgttacatgtttttctttgaaataaaacaaaggggttatagtcattttcatccatg |
233 |
Q |
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| T |
35293393 |
catccatacataaatgactataatttataatagttttaaacaaacgtcacatatttttctttgaaataaaataaaaggattatagtaattttcatccatg |
35293492 |
T |
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| Q |
234 |
aatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgattgtccattttattatttgagtgtatattttcagttgca |
333 |
Q |
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| T |
35293493 |
aatgtttaatagatagccgtaatagcctcttactgtattgaaattataaaatagttattaattgtacattttattatttgagtgtatattttcagttgca |
35293592 |
T |
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| Q |
334 |
tttacattacatttagttaattacaagttactgatgatg |
372 |
Q |
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| T |
35293593 |
tttacattacatttagttaattacaagttacttatgatg |
35293631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 28585008 - 28584946
Alignment:
| Q |
309 |
atttgagtgtatattttcagttgcatttacattacatttagttaattacaagttactgatgatg |
372 |
Q |
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| T |
28585008 |
atttgagtgtaaattt-caattgcatttacattacatttagtttgttacaagttagttatgatg |
28584946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 8407300 - 8407219
Alignment:
| Q |
215 |
atagtcattttcatccatgaatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgatt |
296 |
Q |
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| T |
8407300 |
atagtcattttcatccataaatgtgtaacgaataaccatattagtttctgaatgtatcaaaattttaaaatagttattgatt |
8407219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 2519076 - 2519027
Alignment:
| Q |
323 |
tttcagttgcatttacattacatttagttaattacaagttactgatgatg |
372 |
Q |
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| T |
2519076 |
tttcagttgcatttagattacatttagttagttataagttagttatgatg |
2519027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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