View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707R-Insertion-10 (Length: 392)

Name: NF1707R-Insertion-10
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707R-Insertion-10
NF1707R-Insertion-10
[»] chr1 (7 HSPs)
chr1 (12-182)||(23473789-23473958)
chr1 (87-182)||(40961555-40961650)
chr1 (24-111)||(35306700-35306787)
chr1 (346-382)||(48742014-48742050)
chr1 (238-278)||(7013207-7013247)
chr1 (287-329)||(37920147-37920189)
chr1 (238-278)||(52689536-52689576)
[»] chr3 (6 HSPs)
chr3 (10-170)||(8925810-8925970)
chr3 (335-391)||(55480963-55481019)
chr3 (24-111)||(35231756-35231843)
chr3 (24-175)||(46651297-46651448)
chr3 (236-329)||(30478439-30478533)
chr3 (287-330)||(16280944-16280987)
[»] chr5 (7 HSPs)
chr5 (238-329)||(25994509-25994600)
chr5 (238-329)||(26092536-26092627)
chr5 (238-278)||(25994998-25995038)
chr5 (238-329)||(26093037-26093128)
chr5 (287-329)||(32804888-32804930)
chr5 (289-329)||(14410252-14410292)
chr5 (346-382)||(35110118-35110153)
[»] scaffold0027 (1 HSPs)
scaffold0027 (238-327)||(49184-49272)
[»] chr4 (3 HSPs)
chr4 (238-329)||(32303870-32303962)
chr4 (287-329)||(40361677-40361719)
chr4 (293-329)||(40277072-40277108)
[»] chr2 (6 HSPs)
chr2 (287-326)||(19004907-19004946)
chr2 (238-277)||(26129313-26129352)
chr2 (342-380)||(14413561-14413599)
chr2 (287-329)||(19004820-19004862)
chr2 (287-329)||(33710906-33710948)
chr2 (292-325)||(26424973-26425006)
[»] chr8 (3 HSPs)
chr8 (287-329)||(45156029-45156071)
chr8 (289-329)||(7130146-7130186)
chr8 (238-278)||(38077168-38077208)
[»] chr7 (2 HSPs)
chr7 (342-380)||(20188367-20188405)
chr7 (287-327)||(30859861-30859901)
[»] chr6 (2 HSPs)
chr6 (287-329)||(31778841-31778883)
chr6 (238-278)||(12488472-12488512)
[»] scaffold0015 (1 HSPs)
scaffold0015 (343-380)||(82692-82729)
[»] scaffold0007 (1 HSPs)
scaffold0007 (291-328)||(232390-232427)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 23473958 - 23473789
Alignment:
Q  12 aagacatggtatgtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcccaaattggagggaatg 111  Q
    |||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||||||||  |||| |||| |||||||| ||||||||||||||||    
T  23473958 aagacatgatatgtgatggaatacgaaaatagggaaaaaa-agtaattaattaattaagttgtatcattccattgtatacctcacaaattggagggaatg 23473860  T
Q  112 gaaagcaagtggagatagtggtatatgatgaaatggattccaccatgttcaattccactacattcaatttt 182  Q
     ||| |||| | ||||  ||||||  |||| ||||||||||| ||||||| |||||| | |||||||||||    
T  23473859 aaaaacaagagtagatgatggtatgggatggaatggattccatcatgttccattccattccattcaatttt 23473789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 40961650 - 40961555
Alignment:
Q  87 tatacctcccaaattggagggaatggaaagcaagtggagatagtggtatatgatgaaatggattccaccatgttcaattccactacattcaatttt 182  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  ||||||| |||| ||| ||||||||||| ||| ||| ||||||||||||||||    
T  40961650 tatacctcccaaattggagggaatgaaaaacaagaggagatgatggtataggatggaatagattccaccatattctatttcactacattcaatttt 40961555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 35306700 - 35306787
Alignment:
Q  24 gtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcccaaattggagggaatg 111  Q
    |||||| | ||| |||||||||||||||||||||| |   |||||||| |||||||| ||||  |||||||||||||||| |||||||    
T  35306700 gtgatgaagtaataaaatagggataaaagagtaataatagaattaagtggttccattccattgcatacctcccaaattggggggaatg 35306787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 48742014 - 48742050
Alignment:
Q  346 tcttcttccctctctctccttccgatttcattcaatc 382  Q
    |||||||||||||||||||||||||||||||||||||    
T  48742014 tcttcttccctctctctccttccgatttcattcaatc 48742050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 7013207 - 7013247
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 278  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  7013207 ttaactaacgcaagtgtaaaattaacatgacttaaaatttc 7013247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 37920189 - 37920147
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||||| |||||||||||  |||||||||||||||||    
T  37920189 acacatgcgtgacttaaatcacgcaacgtgagttaactcacgc 37920147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 52689536 - 52689576
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 278  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  52689536 ttaactaacgcaagtataaaattaacatgacttaaaatttc 52689576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 8925970 - 8925810
Alignment:
Q  10 aaaagacatggtatgtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcccaaattggagggaa 109  Q
    ||||||||| ||||||||||||| |||||||||||||||||| || |||| || |||||||||||| |||| |||| |||||||| || ||| |  ||||    
T  8925970 aaaagacattgtatgtgatggaacaagaaaatagggataaaaaagcaattcatcaattaagttgtttcattccattgtatacctcgcagattaggaggaa 8925871  T
Q  110 tggaaagcaagtggagatagtggtatatgatgaaatggattccaccatgttcaattccact 170  Q
    || |||  |||  |||||  | ||||| |||| ||| ||||||||||||||| ||||||||    
T  8925870 tgaaaaataagacgagatgatagtataggatggaatagattccaccatgttccattccact 8925810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 55481019 - 55480963
Alignment:
Q  335 gagtttagttatcttcttccctctctctccttccgatttcattcaatccatcccttc 391  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55481019 gagtttggttatcttcttccctctctctccttccgatttcattcaatccatctcttc 55480963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 35231756 - 35231843
Alignment:
Q  24 gtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcccaaattggagggaatg 111  Q
    |||||| | ||| |||||||||||||||||||||| |   |||||||| |||| ||| ||||  |||||||||||||||| |||||||    
T  35231756 gtgatgaagtaataaaatagggataaaagagtaataatagaattaagtggttctattccattgcatacctcccaaattggggggaatg 35231843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 46651448 - 46651297
Alignment:
Q  24 gtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcccaaattggagggaatggaaagcaagtgg 123  Q
    |||||| ||||| ||||||||||| |||  ||||||| |||||||||    | |||||||||   |||||| ||||||||| |||||| |||  |||  |    
T  46651448 gtgatgaaataaaaaaatagggatgaaatggtaattatttaattaagaaagttcatttcattgcttacctctcaaattggatggaatgaaaaataagaag 46651349  T
Q  124 agatagtggtatatgatgaaatggattccaccatgttcaattccactacatt 175  Q
    |  | ||||||||||||||||| ||| ||| ||||||| |||||||| ||||    
T  46651348 aagtggtggtatatgatgaaatagatcccatcatgttcgattccactccatt 46651297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 30478439 - 30478533
Alignment:
Q  236 aattaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnn-acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    ||||||||||||||| | |||||||||| |||| |||||||||         |||||||||||| |||||| ||||||| |||||||||||||||    
T  30478439 aattaactaacgcaactataaaattaacatgacttaaaatttcgttaattttacacatgcgtgacttaaataacgccgcatgagttaactcacgc 30478533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 16280987 - 16280944
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgcc 330  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||    
T  16280987 acacttgcgtgacttaagtcacgccgcgtgagttaactcacgcc 16280944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 25994509 - 25994600
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||| ||||||||||||||||| |||| |||| |||||       |||||||||||| |||| ||||||||| |||||||||||||||    
T  25994509 ttaactaatgcaagtgtaaaattaacatgacataaagtttcatttttttacacatgcgtgacttaagtcacgccgcctgagttaactcacgc 25994600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 26092536 - 26092627
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||||||||||||||||||| |||| ||||||||||       |||| ||||||| |||| ||| | ||| |||||||||||||||    
T  26092536 ttaactaacgcaagtgtaaaattaacatgacttaaaatttcatttttttacacttgcgtgacttaagtcatgtcgcatgagttaactcacgc 26092627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 25995038 - 25994998
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 278  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  25995038 ttaactaacgcaagtgtaaaattaacatgacttaaaatttc 25994998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 26093128 - 26093037
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    ||||| |||||||||||||||||||| |||| ||||||||||       ||||||| |||| |||| ||||||||  ||| |||||| ||||    
T  26093128 ttaaccaacgcaagtgtaaaattaacatgacttaaaatttcatttttttacacatgtgtgacttaagtcacgccgtatgaattaacttacgc 26093037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 32804930 - 32804888
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    ||||||| |||| |||| |||||||||||||||||||||||||    
T  32804930 acacatgtgtgacttaagtcacgccgcgtgagttaactcacgc 32804888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 14410252 - 14410292
Alignment:
Q  289 acatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||| |||| |||||| ||||||||||||||||||    
T  14410252 acatgcgtgacttaagtcacgctgcgtgagttaactcacgc 14410292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 35110118 - 35110153
Alignment:
Q  346 tcttcttccctctctctccttccgatttcattcaatc 382  Q
    ||||||||||||||||||||||||| |||||||||||    
T  35110118 tcttcttccctctctctccttccga-ttcattcaatc 35110153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 49184 - 49272
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcac 327  Q
    |||| ||||||||||||||||||||| |||| |||||||||        |||||||| ||| |||||||||||||| |||||||||||||    
T  49184 ttaattaacgcaagtgtaaaattaacatgacttaaaatttc-gttttttacacatgcatgacttaaatcacgccgcatgagttaactcac 49272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 32303870 - 32303962
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttca-nnnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||||||||||||||||||| |||| ||||||||||        |||||| ||||| |||| ||||| ||| |||||||||||||||    
T  32303870 ttaactaacgcaagtgtaaaattaacatgacttaaaatttcattttttttacacatacgtgacttaagtcacgtcgcatgagttaactcacgc 32303962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 40361719 - 40361677
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||||| |||| ||||||| |||||||||||||||||    
T  40361719 acacatgcgtgacttaagtcacgccacgtgagttaactcacgc 40361677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 40277108 - 40277072
Alignment:
Q  293 gcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||| |||| |||||||||||||||||||||||||    
T  40277108 gcgtgagttaagtcacgccgcgtgagttaactcacgc 40277072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 19004946 - 19004907
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactca 326  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  19004946 acacatgcgtgacttaaatcacgccgcatgagttaactca 19004907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 26129352 - 26129313
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaattt 277  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  26129352 ttaactaacgcaagtgtaaaattaacatgacttaaaattt 26129313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 380
Target Start/End: Original strand, 14413561 - 14413599
Alignment:
Q  342 gttatcttcttccctctctctccttccgatttcattcaa 380  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  14413561 gttatcttcttccctctctcttcttctgatttcattcaa 14413599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 19004820 - 19004862
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  19004820 acacatgcgtgacttaagtcacgccgcatgagttaactcacgc 19004862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 33710906 - 33710948
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||||| |||| |||||| ||||||||||||||||||    
T  33710906 acacatgcgtgacttaagtcacgctgcgtgagttaactcacgc 33710948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 26424973 - 26425006
Alignment:
Q  292 tgcgtgatttaaatcacgccgcgtgagttaactc 325  Q
    |||||||||||| |||||||||||||||||||||    
T  26424973 tgcgtgatttaagtcacgccgcgtgagttaactc 26425006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 45156029 - 45156071
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||||| ||||||||||| || |||||||||||||||    
T  45156029 acacatgcgtgacttaaatcacgctgcatgagttaactcacgc 45156071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 7130146 - 7130186
Alignment:
Q  289 acatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||| |||| |||||| ||||||||||||||||||    
T  7130146 acatgcgtgacttaagtcacgctgcgtgagttaactcacgc 7130186  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 38077208 - 38077168
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 278  Q
    |||||||||||||||||||||||||| |||  |||||||||    
T  38077208 ttaactaacgcaagtgtaaaattaacatgatttaaaatttc 38077168  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 380
Target Start/End: Original strand, 20188367 - 20188405
Alignment:
Q  342 gttatcttcttccctctctctccttccgatttcattcaa 380  Q
    |||||||||||||||||| || |||||||||||||||||    
T  20188367 gttatcttcttccctctcccttcttccgatttcattcaa 20188405  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 30859861 - 30859901
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcac 327  Q
    |||||||| ||| |||| |||||||||||||||||||||||    
T  30859861 acacatgcatgacttaagtcacgccgcgtgagttaactcac 30859901  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 31778841 - 31778883
Alignment:
Q  287 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 329  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  31778841 acacatgcgtgacttaagtcacgccgcatgagttaactcacgc 31778883  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 12488472 - 12488512
Alignment:
Q  238 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 278  Q
    |||||||||| ||||||||||||||| |||| |||||||||    
T  12488472 ttaactaacgtaagtgtaaaattaacatgacttaaaatttc 12488512  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 82729 - 82692
Alignment:
Q  343 ttatcttcttccctctctctccttccgatttcattcaa 380  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  82729 ttatcttcttccctccctcttcttccgatttcattcaa 82692  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 232427 - 232390
Alignment:
Q  291 atgcgtgatttaaatcacgccgcgtgagttaactcacg 328  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  232427 atgcgtgacttaagtcacgccgcgtgagttaactcacg 232390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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