View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707R-Insertion-11 (Length: 480)
Name: NF1707R-Insertion-11
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707R-Insertion-11 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 34549383 - 34549835
Alignment:
| Q |
8 |
aattccaatttcttagaaatataataagtgacgcaaatcacacttcttacaagtttctagcaaagatggcaagagtaaaagatcagcatgaatgaattag |
107 |
Q |
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| T |
34549383 |
aattccaagttcttagaaatataataagtgacgcaaatcacacttcttacaagtttcttgcaaagacggcaagagtaaaagatcagcatgaatgaattag |
34549482 |
T |
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| Q |
108 |
tccaaatggaatgttggacattttgtatccctcctaattgataaagttgtacacaaaatcttagttcctttatgtgaaattattttcgaaacttcaagaa |
207 |
Q |
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| T |
34549483 |
tccaaatggaatgttggacattttgtatccctcctaattgataaagttgtacacaaaatcttagttcctttatgtgaaattattttcgaaacttcaa--- |
34549579 |
T |
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| Q |
208 |
tagggaaaaagaaactttgagaaattcatgcattaaagaagatggattcttctctaaaccagagattataaacgagtgaggaaagagacatagttaggag |
307 |
Q |
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| T |
34549580 |
-----------------tgagaaattcatgcattaaagaagatgggttcttctctaaaccagagattataaacgagtgaggaaagagacataggtaggag |
34549662 |
T |
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| Q |
308 |
ggacaaaaggagatagttgtaataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaa |
407 |
Q |
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| T |
34549663 |
ggacaaaaggagatagttgtaataattcatacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaa |
34549762 |
T |
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| Q |
408 |
atttggtattttctaaataaat-tctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcat |
480 |
Q |
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| T |
34549763 |
atttagtattttctacataaatctct-tcaagacctggagtgtataagattccttcgtaccaaaaggtcttcat |
34549835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 314 - 480
Target Start/End: Complemental strand, 34377711 - 34377545
Alignment:
| Q |
314 |
aaggagatagttgtaataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttgg |
413 |
Q |
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| T |
34377711 |
aaggagaaagttgtaataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttgg |
34377612 |
T |
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| Q |
414 |
tattttctaaataaattctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcat |
480 |
Q |
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| T |
34377611 |
tatcttctacacaaattctataaatacctggagtgtacaagattccattgtaccaaaaggtcttcat |
34377545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 480
Target Start/End: Complemental strand, 135344 - 135050
Alignment:
| Q |
199 |
cttcaagaatagggaaaaagaaactttgagaaattcatgcattaaagaa----gatggattcttctctaaaccagagattata-aacga--gtgaggaaa |
291 |
Q |
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| T |
135344 |
cttcaagaataggcaaaaataatctttgagaaattcatgcattaaagaaagaagatgggttcttctcaaaaccagagatgaaagaacgaccgagaggaaa |
135245 |
T |
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| Q |
292 |
gagacatagttaggagg--gacaaaaggagatagttgt-----aataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttc |
384 |
Q |
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| T |
135244 |
gagacatagttaagagtaagacagaaggagaaagaggcggagaaagttgtaatacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtc |
135146 |
T |
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| Q |
385 |
attaacatcttcatctttgtcaaatttggtattttctaaataaattctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcat |
480 |
Q |
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| T |
135145 |
attaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcataaagacgtggggtgtataagattccttcgaaccaaaaggtcttcat |
135050 |
T |
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