View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707R-Insertion-12 (Length: 492)
Name: NF1707R-Insertion-12
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707R-Insertion-12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Complemental strand, 3084642 - 3084159
Alignment:
| Q |
9 |
ttagcaagtgtaattgcatgttgttttgaaagctttgcagtaaatgtagtatgtcttcctaaaagaaaatgtaccatgtcttgaaaaagtattcataagt |
108 |
Q |
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| T |
3084642 |
ttagcaagtgcaattgcatgttgttttgaaagctttgcagtaaatgtagtatgtcttcctaaaagaaaatgtaccatgtcttgaaaaagtattaataagt |
3084543 |
T |
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| Q |
109 |
cgaaaacatatcgcactagtttgtaagaattgatttagatcgaacacaaattgttaaatgtaccttgggagtaaacattttgaactcgcttccattactg |
208 |
Q |
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| T |
3084542 |
cgaagacatatcgcactagtttgtaagaattgatttagatggaacacaaattgttaaatgtaccttgggagtaaacattgtgaactcgcttccattactg |
3084443 |
T |
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| Q |
209 |
gtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacat |
308 |
Q |
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| T |
3084442 |
gtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacat |
3084343 |
T |
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| Q |
309 |
aaacagcgttcattggattatctgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtgctgctccaat |
408 |
Q |
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| T |
3084342 |
aaacagcgttcattggattatctgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtcctgctccaat |
3084243 |
T |
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| Q |
409 |
tccactcaacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgactcaagtatgc |
492 |
Q |
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| T |
3084242 |
tccactcaacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgc |
3084159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 77 - 492
Target Start/End: Complemental strand, 3093455 - 3093039
Alignment:
| Q |
77 |
atgtaccatgtcttgaaaaagtat-tcataagtcgaaaacatatcgcactagtttgtaagaattgatttagatcgaacacaaattgttaaatgtaccttg |
175 |
Q |
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||||| |||||||| |||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |
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| T |
3093455 |
atgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcgcactagtttgtaagaattgatttagatcgaacacaaattttaaaatgtacctcg |
3093356 |
T |
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| Q |
176 |
ggagtaaacattttgaactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatga |
275 |
Q |
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| T |
3093355 |
ggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaagctggtaatgccaacaacagaaatga |
3093256 |
T |
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| Q |
276 |
gggagacctctacgggggaaggagacgggacataaacagcgttcattggattatctgacattccttgtcctaccaaaggttgatctaacactacactgat |
375 |
Q |
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| T |
3093255 |
gggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatctgacattccttgtcctacaaatggttgatgtaacactacactgat |
3093156 |
T |
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| Q |
376 |
gttgtgttccctaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtc |
475 |
Q |
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| T |
3093155 |
gttatgttgcttaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtc |
3093056 |
T |
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| Q |
476 |
ccatgactcaagtatgc |
492 |
Q |
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| T |
3093055 |
ccatgattcaagtatgc |
3093039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 45939005 - 45938961
Alignment:
| Q |
316 |
gttcattggattatctgacattccttgtcctaccaaaggttgatc |
360 |
Q |
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| T |
45939005 |
gttcattggattatctgccatcccttgacctaccaaaggctgatc |
45938961 |
T |
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