View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707R-Insertion-13 (Length: 495)
Name: NF1707R-Insertion-13
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707R-Insertion-13 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Original strand, 44695236 - 44695710
Alignment:
| Q |
9 |
atactctgaacatgatggacactgatgttggctgtttgataacaactaccaattcaatgacagcagttgttgccgcaaatgaggaagtaaaacaatcttt |
108 |
Q |
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| T |
44695236 |
atactgtgaacatgatggacactgatgttggctgtttgatggcaactaccaattcaatgacagcagttgttgccgcaaatgaggaagtaaaacaatcttt |
44695335 |
T |
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| Q |
109 |
tgaagatgatttaaactcaacaagttcttcaccctgtgaatggttcatatgcgatgacaatcatagttctacgagatattttgttattcaggtgtggaaa |
208 |
Q |
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| T |
44695336 |
tgcagatgatttaaactcaacaagttcttcaccctgtgaatggttcatatgcgatgacgatcgtagttctacgagatattttgttattcaggtgtggaaa |
44695435 |
T |
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| Q |
209 |
attaaaaggggatatcctattatcttgcaatataacacatatttatttctttctttcaaccgtgttattattcacataacatattagtaagttagcatta |
308 |
Q |
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| T |
44695436 |
attaaaaggggatatcctattatcttgcaat---tcacatattta----tttctttcaaccgtgttattattcacataacatattagtaagttagcatta |
44695528 |
T |
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| Q |
309 |
aaaatgattgcaaatttggannnnnnnnnagtatgctatccaaccaattattgttttgatatgcagggttcagagtcatttgaatcctggcaggcaaacc |
408 |
Q |
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| T |
44695529 |
aaaatgattgcaaatttggatttttttttagtatgctatccaaccaattattgttttgatatgcagggttcagagtcatttgaatcctggcaggcaaacc |
44695628 |
T |
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| Q |
409 |
tactttttgagccagttcaatttgaggtaattgttaccaatgcaggaaaagtacttttttcagatttgattcctcttgttaa |
490 |
Q |
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| T |
44695629 |
tactttttgagccagttcaatttgaggtaattgttaccattgcaggaaaagtacttttttcagatttgattcctcttgttaa |
44695710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 39146580 - 39146439
Alignment:
| Q |
60 |
attcaatgacagcagttgttgccgcaaatgaggaagtaaaacaatcttttgaagatgatttaaactcaacaagttcttcaccctgtgaatggttcatatg |
159 |
Q |
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| T |
39146580 |
attcagtgacagcagtggttgcggcaaaggaggaagtaaaacaggctgttgcagatgatctaaactcaactcattcatcaccttgtgaatggttcatctg |
39146481 |
T |
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| Q |
160 |
cgatgacaatcatagttctacgagatattttgttattcaggt |
201 |
Q |
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| T |
39146480 |
tgatgataaccagagtggtacaagattttttgttattcaggt |
39146439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 39146338 - 39146265
Alignment:
| Q |
368 |
tatgcagggttcagagtcatttgaatcctggcaggcaaacctactttttgagccagttcaatttgaggtaattg |
441 |
Q |
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| T |
39146338 |
tatgtagggttcggagtcattagcatcttggcaagcaaacctactttttgagccaattaaatttgaggtaattg |
39146265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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