View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707R-Insertion-15 (Length: 500)

Name: NF1707R-Insertion-15
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707R-Insertion-15
NF1707R-Insertion-15
[»] chr1 (3 HSPs)
chr1 (339-500)||(19734801-19734962)
chr1 (339-500)||(19730417-19730578)
chr1 (339-383)||(5845343-5845387)
[»] chr7 (1 HSPs)
chr7 (400-495)||(19854962-19855059)
[»] chr2 (2 HSPs)
chr2 (140-189)||(33857627-33857676)
chr2 (9-113)||(41048554-41048658)
[»] chr5 (1 HSPs)
chr5 (339-382)||(40915369-40915412)
[»] chr4 (2 HSPs)
chr4 (22-86)||(22901367-22901431)
chr4 (22-86)||(22953035-22953099)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 339 - 500
Target Start/End: Complemental strand, 19734962 - 19734801
Alignment:
Q  339 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19734962 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgataatatccctcaattactctaaaattattttatcattatgt 19734863  T
Q  439 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19734862 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgc 19734801  T

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Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 339 - 500
Target Start/End: Complemental strand, 19730578 - 19730417
Alignment:
Q  339 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt 438  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19730578 taaaggagtaatatcttagtcattcatgctgcaatacttttgcaataaaactcagttgacaatatcccttaattactctaaaattattttatcattatgt 19730479  T
Q  439 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19730478 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtattgtgc 19730417  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 5845387 - 5845343
Alignment:
Q  339 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaa 383  Q
    |||||||||||||| || |||||| ||||||||||| ||||||||    
T  5845387 taaaggagtaatatttttgtcattaatggtgcaatatttttgcaa 5845343  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 19855059 - 19854962
Alignment:
Q  400 atatccctcaattactctaaaattattttatcattatgtgt--catttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtac 495  Q
    ||||| ||||||||||||||||||||  |||||||||||||  ||||| |||||||||||||||||||||| |||| ||||||||||| | |||||||    
T  19855059 atatcactcaattactctaaaattatcctatcattatgtgtatcatttgtttgtaataacttgtaattagtttacatgctcctagcttttccttgtac 19854962  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 33857676 - 33857627
Alignment:
Q  140 gtacatgttggaaattttgtagaataaaatccatttgactacgctacttt 189  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33857676 gtacatgttggaatttttgtagaataaaatccatttgactacgctacttt 33857627  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 41048658 - 41048554
Alignment:
Q  9 cgattaaatgcacgtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaactgagggaaaagtctaacgtgtat 108  Q
    |||| ||| ||||||||||||  ||||||| ||||| || |||||||| ||||||||||||||| |||||||||||||||  ||||| ||  |||| |||    
T  41048658 cgatcaaacgcacgtgagcacggctgtcaaggggagttttgggtaccttgatccagagtatttcaggaggcaacaactgacagaaaaatcagacgtatat 41048559  T
Q  109 tcctt 113  Q
    |||||    
T  41048558 tcctt 41048554  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 40915412 - 40915369
Alignment:
Q  339 taaaggagtaatatcttagtcattcatggtgcaatacttttgca 382  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  40915412 taaaggagtaatatcttagtcattgatggtgcaatacttttgca 40915369  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 22901431 - 22901367
Alignment:
Q  22 gtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaact 86  Q
    ||||||||| ||||||| ||||| ||||| ||||| ||||| || |||||| | |||||||||||    
T  22901431 gtgagcacagctgtcaaagggagtttcggctaccttgatccggaatatttcagaaggcaacaact 22901367  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 22953099 - 22953035
Alignment:
Q  22 gtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaact 86  Q
    ||||||||| ||||||| ||||| ||||| ||||| ||||| || |||||| | |||||||||||    
T  22953099 gtgagcacagctgtcaaagggagtttcggctaccttgatccggaatatttcagaaggcaacaact 22953035  T

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