View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707R-Insertion-16 (Length: 556)
Name: NF1707R-Insertion-16
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707R-Insertion-16 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Complemental strand, 43236923 - 43236366
Alignment:
| Q |
10 |
tgtgcatagggctccacgtgcccttctattcttgaattagttccaagagcaatatacggcatattat---ccatgagttttctaacttga-gttcatata |
105 |
Q |
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| T |
43236923 |
tgtgcatagggctccacgtgcccttctattcttgaattagttccaagagcaatatacggcatattattatcaatgagttttctaacttgaagttcatata |
43236824 |
T |
|
| Q |
106 |
aatagcaataatccaaaatagactctaga--agtaggggggnnnnnnnnnn------ggaatcttatgctttgcaagtcgcaataatacaattcattgtt |
197 |
Q |
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| T |
43236823 |
aatagcaataatccaaaatagactctagagaagtaggggaagaaaaaaaaaaaaaaaggaatcttatgctttgcaagtcgcaataatacaattcattgtt |
43236724 |
T |
|
| Q |
198 |
gttgcgggatctctcaagttgtgaaaaaccttaactatatatagcaaagagtgaaacggaagggattagtcttttcccattatggaactttcacaaggga |
297 |
Q |
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| T |
43236723 |
gttgtgggatctctcaagttgtgaaaaaccttaactatatatagcaaagagtgaaacggaagggattagtcttttcccattatggaactttcacaaggga |
43236624 |
T |
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| Q |
298 |
ttggttgaagtgtttcttaaatatgagacttctatacaactgaatgattcacttttaacaatcatataatactcaaattgaaattgtaatttctagatct |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43236623 |
ttggttgaagtgtttcttaaatatgagacttctatacagctgaatgattcacttttaacaatcatataacactcaaattgaaattgtaatttctagatct |
43236524 |
T |
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| Q |
398 |
tcataagtattgattgctgctaactttcacatgacacgagtttcaatcaaaatgattagtagtaaatgataggttagcgacatgagaaattgtcgatact |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43236523 |
tcataagtattgattgctgctaactttcacatgacacgagtttcaatcaaaatgattagtagtaaatgataggttaacgacatgagaaattgtcgatact |
43236424 |
T |
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| Q |
498 |
tcacgtgcaaaatatgcaaaaccacacaacaacgttagcgaatttttaaccaaggtat |
555 |
Q |
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| T |
43236423 |
tcacgtgcaaaatatgcaaaaccacacaacaacgatagcgaatttttaaccaaggtat |
43236366 |
T |
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