View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707R-Insertion-17 (Length: 561)
Name: NF1707R-Insertion-17
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707R-Insertion-17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 9 - 561
Target Start/End: Complemental strand, 40180026 - 40179483
Alignment:
| Q |
9 |
tctctgcttatcagtgcaaagcaacaagaaaataattgatcaataagaaaaaagtaaacgataatctatatgtccttaaggaatcacaaccatattgatt |
108 |
Q |
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| T |
40180026 |
tctctgcttatcagtgcaaagcaacaagaaaataattgatcaataagaaaaaagtaaacgataatctatatgtccttaaggaatcacaaccatattgatt |
40179927 |
T |
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| Q |
109 |
tgatatgaatgcacataaaactactcaaactaatgtcttcagctcttcttttttggattttaatgatttgtatttagagtgaaataaaaagacatacttg |
208 |
Q |
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| T |
40179926 |
tgatatgaatgcacataaaactactcaaactaatgtcttcagctcttcttttttggattttaatgatttgtatttagagtgaaataaaaagacatacttg |
40179827 |
T |
|
| Q |
209 |
taacaagacaatgatcatttttgagcaatagtacaatcaaattgattgaaatataattacgaaactgaaaatgaacattaagatgaaatgaaaaaatgtt |
308 |
Q |
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| T |
40179826 |
taacaagacaatgatcatttttgagcaatagtacaatcaaattgactgaaatataattacgaaactgaaaatgaacattaagatgaaatgaaaaaatgtt |
40179727 |
T |
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| Q |
309 |
acctgcagaaccaggcagtgtgattggtggaggaggtgtcactttgagcccccctacaatgttggatttcttagcatttggtgctttgaatgcactgtta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40179726 |
acctgcagaaccaggcagtgtgattggtggaggaggtgtcactttgagcccccctacaatgttggatttcttagcatttggtgctttgaatggactgtta |
40179627 |
T |
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| Q |
409 |
accatatttccattcatgtttgtctcattgttttcctcctcagtgctccattccattttgtcactatcaacaatagcctcatcctcatcctcttcatttt |
508 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179626 |
accata---------atgtttgtctcattgttttcctcctcagtgctccattccattttgtcactatcaacaatagcctcatcctcatcctcttcatttt |
40179536 |
T |
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| Q |
509 |
catcctctttattacattgctctaacgccggcacaccttcaactggatcacca |
561 |
Q |
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| T |
40179535 |
catcctctttattacattgctctaacgccggcacaccttcaacttgatcacca |
40179483 |
T |
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