View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707R-Insertion-18 (Length: 723)

Name: NF1707R-Insertion-18
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707R-Insertion-18
NF1707R-Insertion-18
[»] chr1 (1 HSPs)
chr1 (7-723)||(5828813-5829531)
[»] chr7 (1 HSPs)
chr7 (19-48)||(38603046-38603075)


Alignment Details
Target: chr1 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 7 - 723
Target Start/End: Complemental strand, 5829531 - 5828813
Alignment:
Q  7 cactgtagacacttataacaaatcatgagtttgttaaaataa--gttagataataagtcattgagtttatgctgctgggactagctggtttctaagttag 104  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  5829531 cactgtagacacgtataacaaatcatgagtttgttaaaataatggttagataataagtcattgagtttaggctactggtactagctggtttctaagttag 5829432  T
Q  105 ttgactccatttaggttttactatatattctattgaaactttaaccttgttgtgttatggttttgatgttattgaaaccctatctgtctcttttgttatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||    
T  5829431 ttgactccatttaggttttactatatattctattgaaactttaaccttgttgtgttatggttttaatattattgaaaccctaactgtctcttttgttatt 5829332  T
Q  205 ctctattctctttaattttctacattgttaacatggtatcaagagcatccttcttaagctactaagtttccgctattgagttcccaaaagtttaagaata 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||    
T  5829331 ctctattctctttaattttctatattgttaacatggtatcaagagcatccttcttaaactactaagtttccgctattgagttcccaaaaatttgagaata 5829232  T
Q  305 tgttttagtagttacggccttttggaattgaattttgaatgtaagagcgtgctggatttttaaaagattagtgtatttaagtttcatgaatggtatgttt 404  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5829231 tgttttagtagttacggcctcttggaattgaattttgaatgtaagagcgtgttggatttttaaaagattagtgtatttaagtttcatgaatggtatgttt 5829132  T
Q  405 ttgcggggatggattttgcaactttgttggatcttgttggtggcgtttgtgtaagaatcatatgaagggttttgcttcagggtgtttttccacgaatttc 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5829131 ttgcggggatggattttgcaactttgttggatcttgttggtggcgtttgtgtaagaatcatatgaagggttttgcttcagggtgttcttccacgaatttc 5829032  T
Q  505 atgagtttgcttatgggttgtaaatttagaagatttgtgaagaactctattaaggtgtattttttggataatttggtgagtcaagttattgttgataatg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5829031 atgagtttgcttatgggttgtaaatttagaagatttgtgaagaactctattaaggtgtattttttggataatttggtgagtcaagttattgttgataatg 5828932  T
Q  605 tgtttgtgtaaagtctttattgacgatgtatttgaattttttggttgctcctctttattagttcctctctctattagacggttggttcttctctttggtt 704  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5828931 tgtttgtgaaaagtctttattgatgatgtatttgaatttttttgttgctcctctttattagttcctctctctattagacagttggttcttctctttggtt 5828832  T
Q  705 attgtgtcttcttttattg 723  Q
    |||||||||||||||||||    
T  5828831 attgtgtcttcttttattg 5828813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 38603075 - 38603046
Alignment:
Q  19 ttataacaaatcatgagtttgttaaaataa 48  Q
    ||||||||||||||||||||||||||||||    
T  38603075 ttataacaaatcatgagtttgttaaaataa 38603046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University