View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707R-Insertion-6 (Length: 196)
Name: NF1707R-Insertion-6
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707R-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 39157921 - 39157733
Alignment:
| Q |
8 |
aatcactgctatggaatcaacactttgtattgttgacaaacggtgagctataactacacatgttcttccaaccatcattttctccaatgcttcttgtaca |
107 |
Q |
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| T |
39157921 |
aatcacagctatggaatcaacactttgtattgttgacaaacggtgagctataactacacatgttcttccaaccatcattttctccaatgcttcttgtaca |
39157822 |
T |
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| Q |
108 |
agattctctgatacactgtcaagagcacttgttgcctcatctaacagaagtattggtggattcttcaacattgctctagctattgctat |
196 |
Q |
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| T |
39157821 |
agattctctgatacactgtcaagagcacttgttgcctcatctaacagaagtattggtggattcttcaacattgctctagctattgctat |
39157733 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 31442635 - 31442528
Alignment:
| Q |
65 |
acatgttcttccaaccatcattttctccaatgcttcttgtacaagattctctgatacactgtcaagagcacttgttgcctcatctaacagaagtattggt |
164 |
Q |
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| T |
31442635 |
acatgttcttccaaccattattttctcaagtgcttcttggactaaaacctctgatgcactatcaagtgcacttgtagcttcatccagaagaagaattgct |
31442536 |
T |
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| Q |
165 |
ggattctt |
172 |
Q |
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| T |
31442535 |
ggattctt |
31442528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 17870262 - 17870294
Alignment:
| Q |
164 |
tggattcttcaacattgctctagctattgctat |
196 |
Q |
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| T |
17870262 |
tggattcttcaacatggctctagctattgctat |
17870294 |
T |
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