View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707R-Insertion-7 (Length: 206)

Name: NF1707R-Insertion-7
Description: NF1707R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707R-Insertion-7
NF1707R-Insertion-7
[»] chr4 (8 HSPs)
chr4 (7-206)||(9156643-9156843)
chr4 (34-168)||(9164926-9165060)
chr4 (34-137)||(9181178-9181281)
chr4 (93-179)||(9239481-9239569)
chr4 (58-182)||(9133083-9133207)
chr4 (93-164)||(9307897-9307968)
chr4 (28-65)||(9195114-9195151)
chr4 (37-128)||(9261276-9261364)
[»] scaffold1064 (1 HSPs)
scaffold1064 (75-179)||(2786-2892)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 9156643 - 9156843
Alignment:
Q  7 cacaccggcctcctatcttgaattttgtt-attattttaggcaaaagaccaaatttcaaagttaactatggagataaatgatggtaatgagaaaaataaa 105  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9156643 cacaccggcctgctatcttgaattttttttattattttaggcaaaagaccaaatttcaaagttaactatggagataaatgatggtaatgagaaaaataaa 9156742  T
Q  106 aagcttcagcaagaactggtatgtcattcattctgaatgttttcttttaaggatgcttatgcacattttatcttgaagttttggtgatctagatattttt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9156743 aagcttcagcaagaactggtatgtcattcattctgaatgttttcttttaaggatgcttatgcacattttatcttgaagttttggtgatctagattttttt 9156842  T
Q  206 t 206  Q
    |    
T  9156843 t 9156843  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 168
Target Start/End: Complemental strand, 9165060 - 9164926
Alignment:
Q  34 ttattattttaggcaaaagaccaaatttcaaagttaactatggagataaatgatggtaatgagaaaaataaaaagcttcagcaagaactggtatgtcatt 133  Q
    ||||||||||||||| ||   ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  9165060 ttattattttaggcagaactacaaatttcaaagttaactaaggagagaaatgatgttaatgagaaaaataaaaagcttgagcaagaagtggtatgtcatt 9164961  T
Q  134 cattctgaatgttttcttttaaggatgcttatgca 168  Q
    || |  | |   ||||||||| |||||||||||||    
T  9164960 cagttcgtaaaatttcttttacggatgcttatgca 9164926  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 9181178 - 9181281
Alignment:
Q  34 ttattattttaggcaaaagaccaaatttcaaagttaactatggagataaatgatggtaatgagaaaaataaaaagcttcagcaagaactggtatgtcatt 133  Q
    ||||||||||||||| |||  |||||||||||||||||||  |||| |||||||| ||||||||| |||||||||||| |||||||| ||||||||||||    
T  9181178 ttattattttaggcagaagtacaaatttcaaagttaactaaagagagaaatgatgttaatgagaataataaaaagcttgagcaagaagtggtatgtcatt 9181277  T
Q  134 catt 137  Q
    ||||    
T  9181278 catt 9181281  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 9239481 - 9239569
Alignment:
Q  93 tgagaaaaataaaaagcttcagc--aagaactggtatgtcattcattctgaatgttttcttttaaggatgcttatgcacattttatctt 179  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||  | |  |||||||||  ||||||||||||| ||||||||||    
T  9239481 tgagaaaaataaaaagcttgagcccaagaactggtatgtcattcatttcgtaaattttcttttccggatgcttatgcaaattttatctt 9239569  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 9133207 - 9133083
Alignment:
Q  58 atttcaaagttaactatggagataaatgatggtaatgagaaaaataaaaagcttcagcaagaactggtatgtcattcattctgaatgttttcttttaagg 157  Q
    |||||||||||||||| |||||  |||  || || |||| ||||| |||| |||||| ||||| ||||||  |||| |||| | |  |||||||||| ||    
T  9133207 atttcaaagttaactaaggagaggaattctgttattgagcaaaatcaaaaacttcaggaagaattggtattgcatttattccgtagattttcttttatgg 9133108  T
Q  158 atgcttatgcacattttatcttgaa 182  Q
    ||| || ||| ||||||||||||||    
T  9133107 atgattgtgcccattttatcttgaa 9133083  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 9307968 - 9307897
Alignment:
Q  93 tgagaaaaataaaaagcttcagcaagaactggtatgtcattcattctgaatgttttcttttaaggatgctta 164  Q
    |||| ||||||||| ||||||||||||||||||||| | || |||||| |  | |||| |||||||||||||    
T  9307968 tgagcaaaataaaaggcttcagcaagaactggtatgacgtttattctgtaaatattctcttaaggatgctta 9307897  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 9195114 - 9195151
Alignment:
Q  28 attttgttattattttaggcaaaagaccaaatttcaaa 65  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  9195114 attttcttattattttaggcaaaagaacaaatttcaaa 9195151  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 9261276 - 9261364
Alignment:
Q  37 ttattttaggcaaaagaccaaatttcaaagttaactatggagataaatgatggtaatgagaaaaataaaaagcttcagcaagaactggtatg 128  Q
    ||||||||||||||||  |||| |||||| ||||||   |||| | | |||| || |||||||||| |||| ||| ||||||||||||||||    
T  9261276 ttattttaggcaaaagtacaaagttcaaatttaact---gagagagacgatgttattgagaaaaatgaaaatcttgagcaagaactggtatg 9261364  T

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Target: scaffold1064 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 2786 - 2892
Alignment:
Q  75 ggagataaatgatggtaatgagaaaaataaaaagcttcagc--aagaactggtatgtcattcattctgaatgttttcttttaaggatgcttatgcacatt 172  Q
    ||||| ||| |||| || ||||||||||||||||||| |||  ||||||||||||||||||||||    |  |||||||||| ||||||||||||| |||    
T  2786 ggagagaaaggatgatattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcatttcataaattttcttttacggatgcttatgcaaatt 2885  T
Q  173 ttatctt 179  Q
    |||||||    
T  2886 ttatctt 2892  T

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