View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1707_high_12 (Length: 390)
Name: NF1707_high_12
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 21130815 - 21131176
Alignment:
| Q |
11 |
ttatactaaactttatcttgttcttcatgcgaagttaaaaatctgacaaattgtttcttgtgcaggtagtcgagcgcatcaaaaagtattttgatctatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21130815 |
ttatactaaactttatcttgttcttcatgcgaagttaaaaatctgacaaattgtttcttgtgcaggtagttgagcgcatcaaaaagtattttgatctatt |
21130914 |
T |
|
| Q |
111 |
aggaggcccggctacctttatccaggtatctaattctatattctcaaggagacaaatggattcatgtgttataatttcgaagctaactgaagcaactaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21130915 |
aggaggcccggctacctttatccaggtatctaattctatattctcaaggagacaaatggattcatgtgttataatttcgaagctaactgaagcaactaac |
21131014 |
T |
|
| Q |
211 |
acaaaaatagaaaagaaagcaagaaaagacatttactttcggatgatgataaatagacctctaagcatgaaacaatgaaaccctaaagaacaccatatca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21131015 |
acaaaaatagaaaagaaagcaagaaaagacattttctttcggacgatgataaatagacctctaagcatgaaacaatgaaaccctaaagaacaccatatca |
21131114 |
T |
|
| Q |
311 |
gactagatttatctcttaaccagaagcatttttactgacaaaatattcaactgtgtatagag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21131115 |
gactagatttatctcttaaccagaagcatttttactgacaaaatattcaactgtgtatagag |
21131176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University