View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_high_13 (Length: 385)
Name: NF1707_high_13
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_high_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 172 - 385
Target Start/End: Complemental strand, 4680164 - 4679951
Alignment:
| Q |
172 |
aacataatcctttattgattgattgtattcagcattatcatttaattgatcaagtccaatatctctttccttgttagtaaagatcttatcaattaggatc |
271 |
Q |
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| T |
4680164 |
aacataatcctttattgattgattgtattcagcattatcatttaattgatcaagtccaatatctctttccttgttagtaaagatcttatcaattaggatc |
4680065 |
T |
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| Q |
272 |
cctttcccttgtcattatgcatggtcggttgaacaaacgtaaacagaagcccatcttaatctcagtcattaatcaggaacgtgagaaacaaagaacttat |
371 |
Q |
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| T |
4680064 |
cctttcccttgtcattatgcatggtcggttgaccaaacgtaaacagaagcccatcttaatctcagtcattaatcaggaacgggagaaacaaagaacttat |
4679965 |
T |
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| Q |
372 |
ttgatccaagcagc |
385 |
Q |
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| T |
4679964 |
ttgatccaagcagc |
4679951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 4680321 - 4680233
Alignment:
| Q |
16 |
ctgtgcacagaaatttctttggcagccaggtaatgcatgcatttgatatggctccttaatggggtagcaatatcagatagcacaatcag |
104 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4680321 |
ctgtgcacaggaatttctttggcagccaggtaatgcatgcatttgatatggctccttaacggggtagcaatatcagatagcacaatcag |
4680233 |
T |
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