View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_high_14 (Length: 385)
Name: NF1707_high_14
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 41356806 - 41357162
Alignment:
| Q |
15 |
aattgaggaaatgcaatagaagaaccacatgcatgaactctaatgtcagtcaaaaaagagaatgagagtggtcttttgaatcatgcaagaattcagagtc |
114 |
Q |
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| T |
41356806 |
aattgaggaaatgcaatagaagaaccacatgcatgaactctaatgtcagtcaaaaaagagaatgagagtggtcttttgaatcatgcaagaattcagagtc |
41356905 |
T |
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| Q |
115 |
ggtgaatggagtcaacgccttcatttaatttagcagtgaatttatttacccaaacagccctacaaggctaggtcacactcatagacttggttaaaataat |
214 |
Q |
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| T |
41356906 |
ggtgaatggagtcaacaccttcatttaatttagcagtgaatttatttacccaaacagccctacaaggctgggtcacactcatagacttggttaaaataat |
41357005 |
T |
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| Q |
215 |
gagctagtgctagtaaaataaagagcttgctaacttttgttgctcgtgtttggaaacaatgaacaatttagtagtagtactcaattggaataatttggat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41357006 |
aagctagtgctagtaaaataaagagcttgctaacttttgttgctcatgtttggaaacaatgaacaatttagtagtagtactcaattggaataatttggat |
41357105 |
T |
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| Q |
315 |
tttcatgcaaattaaacgaacctttctttcttttttcttccaagtcattgaatttga |
371 |
Q |
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| T |
41357106 |
tttcatgcaaattaaacgaacctttctttcttttttcttccaagtcattgaatttga |
41357162 |
T |
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