View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1707_high_21 (Length: 337)
Name: NF1707_high_21
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_high_21 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 2838403 - 2838738
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838403 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
2838502 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
2838503 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
2838602 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||| ||||||||||||||| ||||||| ||||||| | | || |
|
|
| T |
2838603 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttc |
2838702 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
|||| || ||||||||| |||||||||||||||||| |
|
|
| T |
2838703 |
ttctcttgggccttcaaatcctacaatttctgtttc |
2838738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 2855613 - 2855948
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2855613 |
cctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcagttccccgacaaaat |
2855712 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2855713 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaa |
2855812 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| | ||| ||||||| |||||||||||||| |
|
|
| T |
2855813 |
aaattagcttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattc |
2855912 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
2855913 |
ttcttttgggccttcaatgcctacaacttctgtttc |
2855948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 5413221 - 5412886
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
5413221 |
cctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttccccgacaaaat |
5413122 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| | |||||||||||| |||| |
|
|
| T |
5413121 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaa |
5413022 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||||||||||||| || |||| || || |||||||||||||||| |||||||||||||| |
|
|
| T |
5413021 |
aaactagcttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattc |
5412922 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
5412921 |
ttcttttggaccttcaattcctacaacttctgtttc |
5412886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2749330 - 2748995
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||| |||||| ||||| ||| | |||||| ||| |
|
|
| T |
2749330 |
cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat |
2749231 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||| |||| |
|
|
| T |
2749230 |
tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa |
2749131 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||| | |||||||||| |||||||||||| ||||||||||| || |
|
|
| T |
2749130 |
aaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttc |
2749031 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
||||||| || ||||||| || |||| ||||||||| |
|
|
| T |
2749030 |
ttcttttgggacttcaataccaacaacttctgtttc |
2748995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2807602 - 2807267
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| | ||||||| |||| | ||| | | ||||||||||||||||||| || |||||||| |
|
|
| T |
2807602 |
cctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaat |
2807503 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||| ||||||| |||| |
|
|
| T |
2807502 |
tgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaa |
2807403 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||| |||| ||||||| |||| |||||| || |
|
|
| T |
2807402 |
aaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttc |
2807303 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
|||| || || ||||| ||||||||||||| |||| |
|
|
| T |
2807302 |
ttctcttgggaattcaaatcctacaatttctctttc |
2807267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2769404 - 2769069
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| ||||||| ||| || ||| | ||||||| ||||||| ||||||| ||||||| | | ||||| ||||||||| || |||||||| |
|
|
| T |
2769404 |
cctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcagtttcctgacaaaat |
2769305 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2769304 |
tgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcat |
2769205 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| ||||||| ||||||| | |||| |
|
|
| T |
2769204 |
aaactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattc |
2769105 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
|||| || ||||||| | |||||||||||||||||| |
|
|
| T |
2769104 |
ttctcttgggccttccaatcctacaatttctgtttc |
2769069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2759549 - 2759214
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
||||||||||| ||||||| ||| || ||| |||||||||| ||||||| ||||||| ||| ||| ||||||||||||||||||| || |||||||| |
|
|
| T |
2759549 |
cctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctgacaaaat |
2759450 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
||| ||||||| ||||||| || ||||||||||||||||||||||||||| || |||||| |||||||||| | || ||||||||||||||||||| |
|
|
| T |
2759449 |
tgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaa |
2759350 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||| ||||||| ||| ||||||| ||||||| | | || |
|
|
| T |
2759349 |
aaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatatagttc |
2759250 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2759249 |
ttcttttgggccttcaaatcctacaatttctgtttc |
2759214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 328
Target Start/End: Complemental strand, 2797692 - 2797369
Alignment:
| Q |
5 |
ttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaattgct |
104 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||| ||||| ||||||| ||||||| |||||||| ||||||| ||||||| | | |||||||| || |
|
|
| T |
2797692 |
ttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcagtttcgctacaaaattcct |
2797593 |
T |
|
| Q |
105 |
ccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaac |
204 |
Q |
| |
|
|||||||||| ||||| | || ||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
2797592 |
ccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaac |
2797493 |
T |
|
| Q |
205 |
tagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttct |
304 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| || || | || |||||||||||||| ||| |
|
|
| T |
2797492 |
tagcttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttcc |
2797393 |
T |
|
| Q |
305 |
ttttggccttcaattcctacaatt |
328 |
Q |
| |
|
| ||||||||| ||| |||||| |
|
|
| T |
2797392 |
ctcgggccttcaaatccgacaatt |
2797369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2818892 - 2818557
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
||||||||||| ||||||| ||| || ||| ||||||| || ||||||| ||||| | || |||| | || ||||||||||| | || || ||||| |
|
|
| T |
2818892 |
cctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcctgataaaat |
2818793 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||||||||| || |||||| ||||||||||| | || ||||||||||||||||||| |
|
|
| T |
2818792 |
tgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaa |
2818693 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| ||||||| ||||||| | | || |
|
|
| T |
2818692 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttc |
2818593 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
|||| | ||||||||| |||||| ||||||||||| |
|
|
| T |
2818592 |
ttctctcgggccttcaaatcctacgatttctgtttc |
2818557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 2790491 - 2790375
Alignment:
| Q |
212 |
gcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggc |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||| |||||||||||||| ||| | ||| |
|
|
| T |
2790491 |
gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc |
2790392 |
T |
|
| Q |
312 |
cttcaattcctacaatt |
328 |
Q |
| |
|
|||||| ||| |||||| |
|
|
| T |
2790391 |
cttcaaatccgacaatt |
2790375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 2790651 - 2790491
Alignment:
| Q |
5 |
ttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaattgct |
104 |
Q |
| |
|
||||||| |||||||||||||||| | ||| ||||||| ||||||| ||||||| |||||||| ||||||| |||||||| | | |||||||| || |
|
|
| T |
2790651 |
ttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttcagtttcgctacaaaattcct |
2790552 |
T |
|
| Q |
105 |
ccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacg |
165 |
Q |
| |
|
|||||||||| ||||| | || ||||| ||| ||||||||||||| |||| ||||||||| |
|
|
| T |
2790551 |
ccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagcacg |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 21945732 - 21945671
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa |
254 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |||| |
|
|
| T |
21945732 |
gctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaa |
21945671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 22104831 - 22104770
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa |
254 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |||| |
|
|
| T |
22104831 |
gctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaa |
22104770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 22187096 - 22187035
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa |
254 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |||| |
|
|
| T |
22187096 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaa |
22187035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 21930529 - 21930473
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac |
249 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
21930529 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccac |
21930473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 22028108 - 22028052
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac |
249 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
22028108 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccac |
22028052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 22034625 - 22034569
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac |
249 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
22034625 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccac |
22034569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 22052841 - 22052786
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctacca |
248 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| | |||||||||||||||| |
|
|
| T |
22052841 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctacca |
22052786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 22208159 - 22208072
Alignment:
| Q |
162 |
cacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac |
249 |
Q |
| |
|
||||||||||||||| | | | |||| || ||||||||||||| ||||||||||||| ||||| ||| | |||||||| || ||||| |
|
|
| T |
22208159 |
cacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccac |
22208072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 22368262 - 22368320
Alignment:
| Q |
185 |
accttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcc |
243 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
22368262 |
accttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc |
22368320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 22436996 - 22437045
Alignment:
| Q |
197 |
tcaaaaactagcttggcaagagtagtttttcctagacctcccattcctac |
246 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
22436996 |
tcaaaaactttcttggccagagtagtttttccttgccctcccattcctac |
22437045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 22179525 - 22179469
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac |
249 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| | ||||||||||| ||||| |
|
|
| T |
22179525 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcccaccac |
22179469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 5955 - 6290
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| | ||||| ||||||| ||||||| ||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
5955 |
cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat |
6054 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaa |
200 |
Q |
| |
|
||||||||||||||||| | || |||||||| ||||||| ||||||||||| || |||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
6055 |
tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa |
6154 |
T |
|
| Q |
201 |
aaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattg |
300 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| || | ||||||||||| || ||||||| ||||||| | |||| |
|
|
| T |
6155 |
aaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatataattc |
6254 |
T |
|
| Q |
301 |
ttctttttggccttcaattcctacaatttctgtttc |
336 |
Q |
| |
|
||| || ||||||| | |||||||| ||| ||||| |
|
|
| T |
6255 |
ctctcttgggccttcgaatcctacaacttcagtttc |
6290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 27294656 - 27294595
Alignment:
| Q |
193 |
gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa |
254 |
Q |
| |
|
||||||||||||| |||| | ||||| ||||||||| | ||||||||||||||||| |||| |
|
|
| T |
27294656 |
gctgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacagaaa |
27294595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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