View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707_high_33 (Length: 250)

Name: NF1707_high_33
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707_high_33
NF1707_high_33
[»] chr5 (1 HSPs)
chr5 (7-101)||(35468301-35468395)
[»] chr1 (3 HSPs)
chr1 (51-101)||(11523245-11523295)
chr1 (51-101)||(41318544-41318595)
chr1 (51-101)||(47820153-47820204)
[»] chr6 (1 HSPs)
chr6 (51-101)||(27899104-27899154)
[»] chr8 (1 HSPs)
chr8 (53-101)||(18603923-18603972)
[»] chr7 (1 HSPs)
chr7 (53-101)||(42561797-42561846)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 35468395 - 35468301
Alignment:
Q  7 taaattatactaaagacaaaataaacttgaccnnnnnnnnnnnntcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 101  Q
    ||||||||| ||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35468395 taaattatattaaagacaaaataaacttgaccaaaaagaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 35468301  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 11523295 - 11523245
Alignment:
Q  51 tcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11523295 tcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 11523245  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 41318595 - 41318544
Alignment:
Q  51 tcaatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 101  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  41318595 tcaatcaattttaaatgcaaggatatttttgtctttttaaaatataaacaca 41318544  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 47820204 - 47820153
Alignment:
Q  51 tcaatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 101  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  47820204 tcaatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 47820153  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 27899154 - 27899104
Alignment:
Q  51 tcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 101  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  27899154 tcaatcaaaattaaatgcaaagatatttttgtctttttaaaattaaacaca 27899104  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 18603972 - 18603923
Alignment:
Q  53 aatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 101  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  18603972 aatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 18603923  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 42561797 - 42561846
Alignment:
Q  53 aatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 101  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  42561797 aatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 42561846  T

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