View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707_high_34 (Length: 249)

Name: NF1707_high_34
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707_high_34
NF1707_high_34
[»] chr1 (3 HSPs)
chr1 (13-179)||(19734796-19734962)
chr1 (13-179)||(19730412-19730578)
chr1 (135-179)||(5845343-5845387)
[»] chr7 (1 HSPs)
chr7 (23-118)||(19854962-19855059)
[»] chr5 (1 HSPs)
chr5 (136-179)||(40915369-40915412)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 19734796 - 19734962
Alignment:
Q  13 cagatgcacagtacaagtacaagctaggagcgtgtagactaattacaagttattacaaataaatgacacataatgataaaataattttagagtaattgag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19734796 cagatgcacagtacaagtacaagctaggagcgtgtagactaattacaagttattacaaataaatgacacataatgataaaataattttagagtaattgag 19734895  T
Q  113 ggatattgtcaactgagttttattgcaaaagtattgcaccatgaatgactaagatattactccttta 179  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19734896 ggatattatcaactgagttttattgcaaaagtattgcaccatgaatgactaagatattactccttta 19734962  T

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Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 19730412 - 19730578
Alignment:
Q  13 cagatgcacagtacaagtacaagctaggagcgtgtagactaattacaagttattacaaataaatgacacataatgataaaataattttagagtaattgag 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19730412 cagatgcacaatacaagtacaagctaggagcgtgtagactaattacaagttattacaaataaatgacacataatgataaaataattttagagtaattaag 19730511  T
Q  113 ggatattgtcaactgagttttattgcaaaagtattgcaccatgaatgactaagatattactccttta 179  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19730512 ggatattgtcaactgagttttattgcaaaagtattgcagcatgaatgactaagatattactccttta 19730578  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 5845343 - 5845387
Alignment:
Q  135 ttgcaaaagtattgcaccatgaatgactaagatattactccttta 179  Q
    |||||||| ||||||||||| |||||| || ||||||||||||||    
T  5845343 ttgcaaaaatattgcaccattaatgacaaaaatattactccttta 5845387  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 19854962 - 19855059
Alignment:
Q  23 gtacaagtacaagctaggagcgtgtagactaattacaagttattacaaataaatg--acacataatgataaaataattttagagtaattgagggatat 118  Q
    ||||||| | ||||||||||| |||| |||||||||||||||||||||| |||||  |||||||||||||  |||||||||||||||||||| |||||    
T  19854962 gtacaaggaaaagctaggagcatgtaaactaattacaagttattacaaacaaatgatacacataatgataggataattttagagtaattgagtgatat 19855059  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 40915369 - 40915412
Alignment:
Q  136 tgcaaaagtattgcaccatgaatgactaagatattactccttta 179  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  40915369 tgcaaaagtattgcaccatcaatgactaagatattactccttta 40915412  T

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