View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_high_4 (Length: 524)
Name: NF1707_high_4
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 22 - 514
Target Start/End: Complemental strand, 30077832 - 30077344
Alignment:
| Q |
22 |
gtcgaaactccccgcttccgacgccgctttctactccgcttcaagaggttgttccgctttcgcagtatgctgctgatcggagacggaggaggtgaatttt |
121 |
Q |
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| T |
30077832 |
gtcgaaactccccgcttccgacgccgctttctactccgcttcaagaggttgttccgctttcgcagtatgctgctgatcggagacggaggaggtgaatttt |
30077733 |
T |
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| Q |
122 |
ctttttcctcgattagtataatttggagtttgattgcgagataaatatagtcttgttgagaattattttagttagagatcaaactagggtaatattttaa |
221 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077732 |
ctttttcctcgattaggataatttggagtttgattgcgagataaatatagtc-tgttgagaattattttagttagagatcaaactagggtaatattttaa |
30077634 |
T |
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| Q |
222 |
tgattaggtttaatatggggaagaatgatatttctatttggttttatatatgcaagggaaatgggaaggnnnnnnnnttgttagtgttaggtgtttaatt |
321 |
Q |
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| T |
30077633 |
tgattaggtttaatatggggaagaatgatatttctatttggttttatatatgcaag---aatgggaagg-aaaaaaattgttagtgttaggtgtttaatt |
30077538 |
T |
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| Q |
322 |
atatgtaatttttcatagggatgtgttgattagtatttcatatataagatcaattcaattcaagtaaatgttgttttctactttatgaaattgttcgttt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077537 |
atatgtaatttttcatagggatgtgttgattagtatttcatatataagatcaattcaattcaagtaaatgttgttttctactttatgaaattgttcgttt |
30077438 |
T |
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| Q |
422 |
a-ttgttgtacaaaaactttgtctaacaccactatagcgacattagtgtagttcatgggagtgagattattcttactaccccaattgccctatg |
514 |
Q |
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| T |
30077437 |
atttgttgtacaaattttttgtctaacaccactatagcgacattagtgtagttcatgggagtgagattattcttactaccccaattgccctatg |
30077344 |
T |
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