View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1707_high_43 (Length: 234)
Name: NF1707_high_43
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_high_43 |
 | |
|
| [»] scaffold1064 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 9156849 - 9156673
Alignment:
| Q |
13 |
cataggaaaaaatatctagatcaccaaaacttcaagataaaatgtgcataagcatccttaaaagaaaacattcagaatgaatgacataccagttcttgct |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9156849 |
cataggaaaaaaaatctagatcaccaaaacttcaagataaaatgtgcataagcatccttaaaagaaaacattcagaatgaatgacataccagttcttgct |
9156750 |
T |
|
| Q |
113 |
gaagctttttatttttctcattaccatcatttatctccatagttaactttgaaatttggtcttttgcctaaaataat |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9156749 |
gaagctttttatttttctcattaccatcatttatctccatagttaactttgaaatttggtcttttgcctaaaataat |
9156673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 9164926 - 9165058
Alignment:
| Q |
57 |
tgcataagcatccttaaaagaaaacattcagaatgaatgacataccagttcttgctgaagctttttatttttctcattaccatcatttatctccatagtt |
156 |
Q |
| |
|
||||||||||||| ||||||||| | | | |||||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
9164926 |
tgcataagcatccgtaaaagaaattttacgaactgaatgacataccacttcttgctcaagctttttatttttctcattaacatcatttctctccttagtt |
9165025 |
T |
|
| Q |
157 |
aactttgaaatttggtcttttgcctaaaataat |
189 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |
|
|
| T |
9165026 |
aactttgaaatttgtagttctgcctaaaataat |
9165058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 9181281 - 9181180
Alignment:
| Q |
88 |
aatgaatgacataccagttcttgctgaagctttttatttttctcattaccatcatttatctccatagttaactttgaaatttggtcttttgcctaaaata |
187 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
9181281 |
aatgaatgacataccacttcttgctcaagctttttattattctcattaacatcatttctctctttagttaactttgaaatttgtacttctgcctaaaata |
9181182 |
T |
|
| Q |
188 |
at |
189 |
Q |
| |
|
|| |
|
|
| T |
9181181 |
at |
9181180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 9239569 - 9239481
Alignment:
| Q |
46 |
aagataaaatgtgcataagcatccttaaaagaaaacattcagaatgaatgacataccagttctt--gctgaagctttttatttttctca |
132 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| | | |||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
9239569 |
aagataaaatttgcataagcatccggaaaagaaaatttacgaaatgaatgacataccagttcttgggctcaagctttttatttttctca |
9239481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 9133083 - 9133207
Alignment:
| Q |
43 |
ttcaagataaaatgtgcataagcatccttaaaagaaaacattcagaatgaatgacataccagttcttgctgaagctttttatttttctcattaccatcat |
142 |
Q |
| |
|
|||||||||||||| ||| || ||||| |||||||||| | | |||| |||| |||||| ||||| |||||| |||| ||||| |||| || || || |
|
|
| T |
9133083 |
ttcaagataaaatgggcacaatcatccataaaagaaaatctacggaataaatgcaataccaattcttcctgaagtttttgattttgctcaataacagaat |
9133182 |
T |
|
| Q |
143 |
ttatctccatagttaactttgaaat |
167 |
Q |
| |
|
| ||||| |||||||||||||||| |
|
|
| T |
9133183 |
tcctctccttagttaactttgaaat |
9133207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 9307897 - 9307968
Alignment:
| Q |
61 |
taagcatccttaaaagaaaacattcagaatgaatgacataccagttcttgctgaagctttttatttttctca |
132 |
Q |
| |
|
||||||||||||| |||| | | |||||| || | ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
9307897 |
taagcatccttaagagaatatttacagaataaacgtcataccagttcttgctgaagccttttattttgctca |
9307968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 9261364 - 9261276
Alignment:
| Q |
97 |
cataccagttcttgctgaagctttttatttttctcattaccatcatttatctccatagttaactttgaaatttggtcttttgcctaaaataa |
188 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| || |||| | | |||| |||||| |||||| |||| |||||||||||||||| |
|
|
| T |
9261364 |
cataccagttcttgctcaagattttcatttttctcaataacatcgtctctctc---agttaaatttgaactttgtacttttgcctaaaataa |
9261276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 2892 - 2786
Alignment:
| Q |
46 |
aagataaaatgtgcataagcatccttaaaagaaaacattcagaatgaatgacataccagttctt--gctgaagctttttatttttctcattaccatcatt |
143 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||| || |||| || |
|
|
| T |
2892 |
aagataaaatttgcataagcatccgtaaaagaaaatttatgaaatgaatgacataccagttcttgcgctcaagctttttatttttctcaatatcatcctt |
2793 |
T |
|
| Q |
144 |
tatctcc |
150 |
Q |
| |
|
| ||||| |
|
|
| T |
2792 |
tctctcc |
2786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University