View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_high_45 (Length: 229)
Name: NF1707_high_45
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 36146831 - 36146631
Alignment:
| Q |
13 |
tattcaaaggcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36146831 |
tattcaaaggcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagaattgaa |
36146732 |
T |
|
| Q |
113 |
gtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36146731 |
gtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa |
36146632 |
T |
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| Q |
213 |
a |
213 |
Q |
| |
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| |
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| T |
36146631 |
a |
36146631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 36075456 - 36075261
Alignment:
| Q |
13 |
tattcaaaggcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaa |
112 |
Q |
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||||||||||||||| | |||||||| ||||| ||||||| |||| | |||||||||| |||||||||||||||||||||| || || ||||||| |
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| T |
36075456 |
tattcaaaggcatcccagcgcagagcttaatgaattttgtcagaagagaggtctcaagttgcaattcagagatttgtggaaagtatctgagatagttgaa |
36075357 |
T |
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| Q |
113 |
gtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatg |
208 |
Q |
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| T |
36075356 |
gttcttataagtgaggaattggttggaagtggcaagtgtggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaatatatg |
36075261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 36156688 - 36156509
Alignment:
| Q |
33 |
cagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttataaatgaggagtt |
132 |
Q |
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|||||||||| ||||||||||| ||||||| | || ||||||||| ||| |||||| || | |||||| |||| ||| | || |||||| | || |
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| T |
36156688 |
cagagcttcaagaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtgggaaaaatctatgaacattgatgtcttcatcaatgagaaatt |
36156589 |
T |
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| Q |
133 |
tgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa |
212 |
Q |
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| T |
36156588 |
tgttggaagaggcacttatggctctaagaaagacattgcacattatagagctgcaaaaaatgctttggataatatagaaa |
36156509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 36162709 - 36162540
Alignment:
| Q |
43 |
tgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttataaatgaggagtttgttggaagt |
142 |
Q |
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|||||||||||| ||||||| | || ||||||||| ||| ||||||||||| |||||| |||| ||| ||||||||||| | ||||||||||| |
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| T |
36162709 |
tgaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttataaatgagaaatttgttggaaga |
36162610 |
T |
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| Q |
143 |
ggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa |
212 |
Q |
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|| |||||||||||||||||| ||||||| |||| || ||||| ||||||||| | ||||| |||| |
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| T |
36162609 |
ggcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataatatagaaa |
36162540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 26530191 - 26530390
Alignment:
| Q |
13 |
tattcaaaggcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaa |
112 |
Q |
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||||||||||||||| | |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26530191 |
tattcaaaggcatccgatggcagagcttcatgaagtttgtcacaataaaagactcaagttacaattcagagatttgtggaaagagtctatgagagttgaa |
26530290 |
T |
|
| Q |
113 |
gtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
26530291 |
gtccttataaatgaggagtttgttggaagtggtgtttatggttctaagaaagaaattgcacgcaatagggcagcaaaaaatgttttgcaaaatatggaaa |
26530390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 26525807 - 26525986
Alignment:
| Q |
22 |
gcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttata |
121 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||| | || |||||||| ||| |||||| || | | |||| |||| ||| | || |
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| T |
26525807 |
gcatcccgtcacagagcttcatgaagtttgtcagaagaaaaaatttaatttacaatttgtagacttgtgggaaaaatcaatgaacattgatgtcttcatc |
26525906 |
T |
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| Q |
122 |
aatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttgga |
201 |
Q |
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|||||| | ||||||||||| || |||||||||||||||||| |||| ||| |||| || ||||||||||||||||| |
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| T |
26525907 |
aatgagaaatttgttggaagaggcacttatggctctaagaaagacattgtacattatagagctgcaaaaaatgctttgga |
26525986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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