View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707_low_1 (Length: 756)

Name: NF1707_low_1
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707_low_1
NF1707_low_1
[»] scaffold0170 (1 HSPs)
scaffold0170 (109-281)||(19727-19899)
[»] chr1 (1 HSPs)
chr1 (647-728)||(23656921-23657002)
[»] chr2 (1 HSPs)
chr2 (647-727)||(4588532-4588612)
[»] chr3 (2 HSPs)
chr3 (132-244)||(3001600-3001706)
chr3 (634-727)||(43109127-43109220)
[»] chr7 (2 HSPs)
chr7 (630-728)||(19534001-19534099)
chr7 (536-728)||(24215123-24215315)
[»] chr5 (1 HSPs)
chr5 (644-730)||(36067333-36067419)
[»] chr4 (1 HSPs)
chr4 (615-728)||(40159320-40159433)


Alignment Details
Target: scaffold0170 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 109 - 281
Target Start/End: Original strand, 19727 - 19899
Alignment:
Q  109 cgcaaatatcatgaaaattctttcagatctagttgcggttgcatcttgtcttctttttcttgaatcatatttggaagcttgtgtagatctttgaaccttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19727 cgcaaatatcatgaaaattctttcagatctagttgcggttgcagcttgtcttctttttcttgaatcatatttggaagcttgtgtagatctttgaaccttg 19826  T
Q  209 agcagacttaatgcaaatgttacatttacttttgtttcttgaaatgttgggaattatagaaaataagtttgtt 281  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  19827 agcagacttaatgcaaatgttacatttacttttgttccttgaaatgttggcaattatagaaaataagtttgtt 19899  T

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Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 647 - 728
Target Start/End: Original strand, 23656921 - 23657002
Alignment:
Q  647 acccgtttagaccgacccgcacgccaacggactattcggaccggacggtttgggccggatagctgttttttgtccagcccta 728  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  23656921 acccgtttagaccgacccgcacgtcaacgggccattcggaccggacggtttggaccggatggctggtttttgtccagcccta 23657002  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 647 - 727
Target Start/End: Complemental strand, 4588612 - 4588532
Alignment:
Q  647 acccgtttagaccgacccgcacgccaacggactattcggaccggacggtttgggccggatagctgttttttgtccagccct 727  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||| |||| |||||||||||||||    
T  4588612 acccgtttagaccgacccgcacgtcaacgggccattcggaccggacggtttggaccggatggctggtttttgtccagccct 4588532  T

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Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 3001706 - 3001600
Alignment:
Q  132 cagatctagttgcggttgcatcttgtcttctttttcttgaatcatatttggaagcttgtgtagatctttgaaccttgagcagacttaatgcaaatgttac 231  Q
    |||||||||||||||||||| |||||||||||      |||||| || ||||||| ||||||||||| ||||||||||||||| || ||||||||| ||     
T  3001706 cagatctagttgcggttgcagcttgtcttctt------gaatcaaatatggaagcatgtgtagatctatgaaccttgagcagatttgatgcaaatgctat 3001613  T
Q  232 atttacttttgtt 244  Q
    | ||| |||||||    
T  3001612 agttatttttgtt 3001600  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 634 - 727
Target Start/End: Original strand, 43109127 - 43109220
Alignment:
Q  634 tcaaaaccggttcacccgtttagaccgacccgcacgccaacggactattcggaccggacggtttgggccggatagctgttttttgtccagccct 727  Q
    ||||||| | || ||||||||||||||| |||||||||||| | | ||||||||||| |||||||||| || || | |||||||||||||||||    
T  43109127 tcaaaactgttttacccgtttagaccgatccgcacgccaacaggccattcggaccgggcggtttgggctggttaacagttttttgtccagccct 43109220  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 630 - 728
Target Start/End: Original strand, 19534001 - 19534099
Alignment:
Q  630 cccgtcaaaaccggttcacccgtttagaccgacccgcacgccaacggactattcggaccggacggtttgggccggatagctgttttttgtccagcccta 728  Q
    ||||||||||||| || ||   |||||||| |||| ||||||||||| | ||||||||||| ||||||||||||| |  | ||||||||||||||||||    
T  19534001 cccgtcaaaaccgttttacttatttagaccaacccacacgccaacgggccattcggaccgggcggtttgggccggttgacagttttttgtccagcccta 19534099  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 536 - 728
Target Start/End: Original strand, 24215123 - 24215315
Alignment:
Q  536 tatgcagtataatcggtcggctttgggttatcgtggatgaatttctaccatccgaaccgaaccgtgccaatccatgccaaaccggatctgtgagcccgtc 635  Q
    ||||||| |||| |||||||   ||||||| ||||| ||||||| ||| ||||||| |  ||||| | ||||||  |  ||||| ||||   |||||||     
T  24215123 tatgcagcataaacggtcggtaatgggttaccgtggttgaatttttacaatccgaaaccgaccgtacgaatccacacagaaccgaatctacaagcccgtt 24215222  T
Q  636 aaaaccggttcacccgtttagaccgacccgcacgccaacggactattcggaccggacggtttgggccggatagctgttttttgtccagcccta 728  Q
     |||||| || |||| | || ||||||||||| | |||||| | ||||||| |||||||||||||||||    ||||||||||||||||||||    
T  24215223 gaaaccgctttacccatctaaaccgacccgcaagtcaacgggccattcggatcggacggtttgggccggtcgactgttttttgtccagcccta 24215315  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 644 - 730
Target Start/End: Complemental strand, 36067419 - 36067333
Alignment:
Q  644 ttcacccgtttagaccgacccgcacgccaacggactattcggaccggacggtttgggccggatagctgttttttgtccagccctagc 730  Q
    ||||||||||| | ||||||||||||||||||| | ||||||||||| | ||||||| ||||| ||  ||| |||||||||||||||    
T  36067419 ttcacccgtttgggccgacccgcacgccaacgggccattcggaccgggcagtttgggtcggatggccctttcttgtccagccctagc 36067333  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 728
Target Start/End: Original strand, 40159320 - 40159433
Alignment:
Q  615 aaccggatctgtgagcccgtcaaaaccggttcacccgtttagaccgacccgcacgccaacggactattcggaccggacggtttgggccggatagctgttt 714  Q
    ||||||||||   |||||||  |||||| || |||| | || ||||||||||| | |||||| | ||||||| |||||||||||||||||    ||||||    
T  40159320 aaccggatctacaagcccgttgaaaccgctttacccatctaaaccgacccgcaagtcaacgggccattcggatcggacggtttgggccggtcgactgttt 40159419  T
Q  715 tttgtccagcccta 728  Q
    ||||||||||||||    
T  40159420 tttgtccagcccta 40159433  T

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