View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_17 (Length: 369)
Name: NF1707_low_17
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 44298544 - 44298886
Alignment:
| Q |
1 |
attgtcgatttcatcttcgttccataatcagcctgtcacattaatggaataatttgctcatattgtaaattcttcaatgaaattaaatggaattaataat |
100 |
Q |
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| T |
44298544 |
attgtcgatttcatcttcgttccataatcagcctgtcacattaatggaataatttgctcatattgtaaattcttcaatgaaattaaatggaat----aat |
44298639 |
T |
|
| Q |
101 |
cattacctgaagtatgcaaccacccaaacccattccttcaaagagttgatggaagcaaagtgcagcaatgagaggccttatggtgcaatggttctctgaa |
200 |
Q |
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| T |
44298640 |
cattacctgaagtatgcaaccacccaaacccattccttcaaagagttgatggaagcaaagtgcagcaatgagaggccttatggtgcaatggttctctgaa |
44298739 |
T |
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| Q |
201 |
gcacccaatgacaaaccaatcactacagagtgcaccacaattcctaactccaaaaccttaatccaattccacacaacttacattaattaatataacaaca |
300 |
Q |
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| T |
44298740 |
gcacccaatgacaaaccaatcactacagagtgcaccacaattcctaactccaaaaccttaatccaattccacacaacttacattaattaatataacaatg |
44298839 |
T |
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| Q |
301 |
acatcatcttattaacaatacgaaagaaattgattaacctgagccacaaca |
351 |
Q |
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| | || |||||||||||||||||||||||||||||||||||||||| |
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| T |
44298840 |
ataaaat----ttaacaatacgaaagaaattgattaacctgagccacaaca |
44298886 |
T |
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