View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_18 (Length: 367)
Name: NF1707_low_18
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 3084293 - 3084642
Alignment:
| Q |
1 |
tcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggc |
100 |
Q |
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| T |
3084293 |
tcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggc |
3084392 |
T |
|
| Q |
101 |
attaccaacttcggcagctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3084393 |
attaccaacttcggcagctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcacaatgtttactcccaaggtacatttaacaa |
3084492 |
T |
|
| Q |
201 |
tttgtgttcgatctaaatcaattcttacaaactagtgcgatatgttttcgacttatgaatactttttcaagacatggtacattttcttttaggaagacat |
300 |
Q |
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| T |
3084493 |
tttgtgttccatctaaatcaattcttacaaactagtgcgatatgtcttcgacttattaatactttttcaagacatggtacattttcttttaggaagacat |
3084592 |
T |
|
| Q |
301 |
actacatttactgcaaagctttcaaaacaacatgcaattacacttgctaa |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3084593 |
actacatttactgcaaagctttcaaaacaacatgcaattgcacttgctaa |
3084642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 3093173 - 3093455
Alignment:
| Q |
1 |
tcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggc |
100 |
Q |
| |
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|||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| ||||||||| |
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| T |
3093173 |
tcaaccatttgtaggacaaggaatgtcagataacccaatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttggc |
3093272 |
T |
|
| Q |
101 |
attaccaacttcggcagctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaa |
200 |
Q |
| |
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||||||| ||| |||||||| |||||||||| ||||| ||| | |||||| || | ||| || ||| ||||||| ||||| |||||||||| | || |
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| T |
3093273 |
attaccagctttggcagctatattgaagccgctagcggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaaaa |
3093372 |
T |
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| Q |
201 |
tttgtgttcgatctaaatcaattcttacaaactagtgcgatatgttttcgacttatga-atactttttcaagacatggtacat |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||| |||||||| ||||| |
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| T |
3093373 |
tttgtgttcgatctaaatcaattcttacaaactagtgcgatatgtctttgacctatgacttactttttaaagacatgttacat |
3093455 |
T |
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