View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707_low_19 (Length: 357)

Name: NF1707_low_19
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707_low_19
NF1707_low_19
[»] chr2 (3 HSPs)
chr2 (152-341)||(15783549-15783741)
chr2 (11-61)||(15783414-15783464)
chr2 (15-61)||(25235264-25235310)
[»] chr4 (5 HSPs)
chr4 (11-58)||(26603381-26603428)
chr4 (11-57)||(54866903-54866949)
chr4 (15-58)||(49355412-49355455)
chr4 (11-61)||(37061669-37061719)
chr4 (12-58)||(46419716-46419762)
[»] chr3 (6 HSPs)
chr3 (11-58)||(9373433-9373480)
chr3 (11-58)||(46489267-46489314)
chr3 (11-57)||(51656525-51656571)
chr3 (15-58)||(9373941-9373984)
chr3 (11-58)||(53521713-53521760)
chr3 (22-58)||(36006474-36006510)
[»] chr8 (1 HSPs)
chr8 (15-58)||(44428551-44428594)
[»] chr1 (4 HSPs)
chr1 (11-58)||(20130602-20130649)
chr1 (11-58)||(21056223-21056270)
chr1 (11-57)||(35598898-35598944)
chr1 (15-57)||(33373635-33373677)
[»] chr7 (1 HSPs)
chr7 (11-57)||(34989395-34989441)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 152 - 341
Target Start/End: Original strand, 15783549 - 15783741
Alignment:
Q  152 taggttaaaac-aggccaaaattttgtgtt--aattaactttaaccaagagatatacattgttctacacagaagccattcatggaaaacgaaaataacag 248  Q
    ||||||||||| ||| |||||||||| |||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15783549 taggttaaaactagggcaaaattttgggttcgaattaacttgaaccaagagatatacattgttctacacagaagccattcatggaaaacgaaaataatag 15783648  T
Q  249 taagaggaagaatactaccaacaccatcaacgatttccacgacgatatactaactcatataatctcttttctaccgatcaaagatgctttcag 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15783649 taagaggaagaatactaccaacaccatcaacgatttccacgacgatatactaactcatataatctcttttctaccgatcaaagatgctttcag 15783741  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 15783414 - 15783464
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaattagaag 61  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  15783414 ataggaggatttgtttatttgtttagtaaaattaaggagaaaaattagaag 15783464  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 25235310 - 25235264
Alignment:
Q  15 gaggatttgtttatttgtttaataaaattaacgagaaaaattagaag 61  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||||    
T  25235310 gaggttttgtttatttgtttagtaaaattaaggagaaaaattagaag 25235264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 26603381 - 26603428
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  26603381 ataggaggatttgtttatttgtttagtaaaattaaggagaaaaattag 26603428  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 54866949 - 54866903
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaatta 57  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  54866949 ataggaggatttgtttatttgtttagtaaaattaaggagaaaaatta 54866903  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 49355455 - 49355412
Alignment:
Q  15 gaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  49355455 gaggatttgtttatttgtttagtaaaattaaggagaaaaattag 49355412  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 37061719 - 37061669
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaattagaag 61  Q
    ||||||| |||||||||||||| || ||||||||| |||||||||||||||    
T  37061719 ataggagaatttgtttatttgtctagtaaaattaaggagaaaaattagaag 37061669  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 46419762 - 46419716
Alignment:
Q  12 taggaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    |||||||||||||||| ||||||| ||||||||| |||||| |||||    
T  46419762 taggaggatttgtttagttgtttagtaaaattaaggagaaagattag 46419716  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 9373433 - 9373480
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  9373433 ataggaggatttgtttatttgtttagtaaaattaaggagaaaaattag 9373480  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 46489267 - 46489314
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  46489267 ataggaggatttgtttatttgtttagtaaaattaaggagaaaaattag 46489314  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 51656571 - 51656525
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaatta 57  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  51656571 ataggaggatttgtttatttgtttagtaaaattaaggagaaaaatta 51656525  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 9373941 - 9373984
Alignment:
Q  15 gaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  9373941 gaggatttgtttatttgtttagtaaaattaaggagaaaaattag 9373984  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 53521713 - 53521760
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    |||||||||||||||||||| |||| ||||||||| || |||||||||    
T  53521713 ataggaggatttgtttatttatttagtaaaattaaggaaaaaaattag 53521760  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 36006474 - 36006510
Alignment:
Q  22 tgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  36006474 tgtttatttgtttagtaaaattaaggagaaaaattag 36006510  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 44428594 - 44428551
Alignment:
Q  15 gaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  44428594 gaggatttgtttatttgtttagtaaaattaaggagaaaaattag 44428551  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 20130602 - 20130649
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  20130602 ataggaggatttgtttatttgtttagtaaaactaaggagaaaaattag 20130649  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 21056270 - 21056223
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaattag 58  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  21056270 ataggaggatttgcttatttgtttagtaaaattaaggagaaaaattag 21056223  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 35598944 - 35598898
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaatta 57  Q
    |||||||||||||||||||| |||| ||||||||| |||||||||||    
T  35598944 ataggaggatttgtttatttatttagtaaaattaaggagaaaaatta 35598898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 33373677 - 33373635
Alignment:
Q  15 gaggatttgtttatttgtttaataaaattaacgagaaaaatta 57  Q
    |||| |||||||||||||||| ||||||||| |||||||||||    
T  33373677 gagggtttgtttatttgtttagtaaaattaaggagaaaaatta 33373635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 34989395 - 34989441
Alignment:
Q  11 ataggaggatttgtttatttgtttaataaaattaacgagaaaaatta 57  Q
    |||||||||||||||||||| |||| ||||||||| |||||||||||    
T  34989395 ataggaggatttgtttatttctttagtaaaattaaggagaaaaatta 34989441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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