View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_20 (Length: 350)
Name: NF1707_low_20
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 11413041 - 11413249
Alignment:
| Q |
16 |
aatatgatttttattccatgtgactgatgataagtggaaaaactatctaatgaattttatcaagaatgttcgttaattaatgttattattacttatgtaa |
115 |
Q |
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| T |
11413041 |
aatatgatttttattccatgtgactgatgataagtggaaaaactatctaatgaattttaccaagaatgttcgttaattaatgttattattacttatgtaa |
11413140 |
T |
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| Q |
116 |
tctcttaatcaagtttcaactatattatatttaacctattttttatttactatgcttattgtgctcatcattgacccgtgtgaagcacgggagcacgatc |
215 |
Q |
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| T |
11413141 |
tctcttaatcaagtttcaactatattatatttaacctattttttatttactatgcttattgtgcttatcattgacccgtgtgaagcacgggagcacgatt |
11413240 |
T |
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| Q |
216 |
tagtatgat |
224 |
Q |
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||||||||| |
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| T |
11413241 |
tagtatgat |
11413249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 11413327 - 11413383
Alignment:
| Q |
278 |
aatttggtgtgtattaagatacaatcccacctcttatattagactattacttttccc |
334 |
Q |
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| T |
11413327 |
aatttggtgtgtattaagatacaatcctacctcttatattagactattacttttccc |
11413383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 34875102 - 34875169
Alignment:
| Q |
80 |
aatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatattt |
147 |
Q |
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| T |
34875102 |
aatgttcgttaattaatgttattattactcatgtaatgttgtaatgaaatttcaattatatcatattt |
34875169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 20807390 - 20807538
Alignment:
| Q |
78 |
agaatgttcgttaattaatgttattatta---cttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgct--- |
171 |
Q |
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| T |
20807390 |
agaatgttcgttaattaatgttattattattactcatgtgatgtcgtaatggagtttcaatagtattatatttaatgtgcttttaatttattatgctcat |
20807489 |
T |
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| Q |
172 |
-tattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagt |
219 |
Q |
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| T |
20807490 |
atattgtgctcatcattttcccgtgcgaagcacggttgcacaatctagt |
20807538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 15029151 - 15029102
Alignment:
| Q |
171 |
ttattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagta |
220 |
Q |
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| T |
15029151 |
ttattgtgttcaccattgacccgtgcgaagcacgggagtgcgatctagta |
15029102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 15598488 - 15598402
Alignment:
| Q |
81 |
atgttcgttaattaatgttatt---attacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttattta |
164 |
Q |
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| T |
15598488 |
atgttcgttaattaatgttattattattacttatgtgatgtcgtaatgaagtctcaaatgcattatatttaacatgtttttaattta |
15598402 |
T |
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