View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_23 (Length: 333)
Name: NF1707_low_23
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 38451730 - 38451519
Alignment:
| Q |
13 |
atactaagtaaagattaaaataacccataaaaaagattaaggtaaagctattttatgcaatacaaacaaaataaaacttgaaataaaattaaaccacatt |
112 |
Q |
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| T |
38451730 |
atactaagtaaagattaaaataacctataaaaaagattaaggtaaagctattttatgcaatacaaacaaaataaaacttaaaataaaattaaaccacatt |
38451631 |
T |
|
| Q |
113 |
ttctctcaaaatttaattcgaatggataaagtgtactttatca-nnnnnnnnatgaaatccactttctcataatttaattctttttattgctataactca |
211 |
Q |
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| T |
38451630 |
t--tctcataatttaattcgaatggataaagtgtactttatcatttttttttatgaaatccactttctcataatttaattctttttattgctataactca |
38451533 |
T |
|
| Q |
212 |
tgtaaattataaac |
225 |
Q |
| |
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|||||||||||||| |
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| T |
38451532 |
tgtaaattataaac |
38451519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 26034061 - 26034201
Alignment:
| Q |
13 |
atactaagtaaagattaaaataacccataaaaaagattaaggtaaagctattttatgcaatacaaacaaaataaaacttgaaataaaattaaaccacatt |
112 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
26034061 |
atactaagtaaagattaaaataacccatgaaagagattaagataaagctattttatgcaagacaaacaaaataaaacttaaaataaaattaaaccacatt |
26034160 |
T |
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| Q |
113 |
ttctctcaaaatttaattcgaatggataaagtgtactttatca |
155 |
Q |
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| T |
26034161 |
t--tctcagaatttaagtcgaatggataaagtgcagtttatca |
26034201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 38455173 - 38455079
Alignment:
| Q |
13 |
atactaagtaaagattaaaataacccataaaaa-agattaaggtaaagctattttatgcaatacaaacaaaataaaacttgaaataaaattaaac |
106 |
Q |
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|||||||||||||||||||||||||| |||||| || ||||| ||||||| |||||| |||||||||||||||||||||| || ||||||||||| |
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| T |
38455173 |
atactaagtaaagattaaaataacccgtaaaaagaggttaagttaaagctcttttatacaatacaaacaaaataaaacttaaattaaaattaaac |
38455079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 26030033 - 26030096
Alignment:
| Q |
237 |
attttcaatcttttggctcaaacttatcttctctggactagttcaagaagatcttgcaactttg |
300 |
Q |
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||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |
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| T |
26030033 |
attttcactattttggctcaaacttatcttctctcgactagttcaagaagatattgcaagtttg |
26030096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 38451462 - 38451415
Alignment:
| Q |
253 |
ctcaaacttatcttctctggactagttcaagaagatcttgcaactttg |
300 |
Q |
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| T |
38451462 |
ctcaaacttatcttctctcgactagttcaagaagatcttgcaactttg |
38451415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 26029739 - 26029834
Alignment:
| Q |
13 |
atactaagtaaagattaaaataacccataaaaa-agattaaggtaaagctattttatgcaatacaaacaaaataaaacttgaaataaaattaaacc |
107 |
Q |
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|
|||||||||||||||||||||||||| |||||| || ||||| ||| | | ||| | ||| |||||||||||||||||| || ||||| |||||| |
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| T |
26029739 |
atactaagtaaagattaaaataacccgtaaaaagaggttaagttaatgttttttagtacaaaacaaacaaaataaaacttaaattaaaagtaaacc |
26029834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 26034246 - 26034281
Alignment:
| Q |
190 |
ttctttttattgctataactcatgtaaattataaac |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26034246 |
ttctttttattgctataactcatgtaaattataaac |
26034281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 38451496 - 38451463
Alignment:
| Q |
237 |
attttcaatcttttggctcaaacttatcttctct |
270 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38451496 |
attttcaatcttttggctcaaacttatcttctct |
38451463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 26041753 - 26041790
Alignment:
| Q |
71 |
aatacaaacaaaataaaacttgaaataaaattaaacca |
108 |
Q |
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| T |
26041753 |
aatacaaacaaaataaaacttaaattaaaattaaacca |
26041790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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