View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_28 (Length: 297)
Name: NF1707_low_28
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 4679973 - 4679707
Alignment:
| Q |
14 |
agaacttatttgatccaagcagccatatctttttctattacattctctccattatagctgataatattcacggatgtaaatataatattagtgttctaat |
113 |
Q |
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| T |
4679973 |
agaacttatttgatccaagcagccatatctttttctattacattctctccattatagctgataatattcacggatgtaaatataatattagtgttctaat |
4679874 |
T |
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| Q |
114 |
tgaaatttggggagaggataaaattttggtcgcagttaacagaatgacctgtttactcagattcaaagctttgagacagagcttgctgtacctgagctcg |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4679873 |
tgaaatttggggagaggataaaattttggtcacagttaacagaatgacctgtttactcagattcaaagctttgagacagagcttgctgtaccagagctcg |
4679774 |
T |
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| Q |
214 |
tctccaaggaaggtggtcctgaaacattccgtggagtttttattcgtgccccagcaattcttgatgt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4679773 |
tctccaaggaaggtggtcctgaaacattccgtggagtttttattcgtgccccagcaattcttgatgt |
4679707 |
T |
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