View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_30 (Length: 283)
Name: NF1707_low_30
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 3500663 - 3500848
Alignment:
| Q |
43 |
gagccatcattagcatcaatgatgatttacatttcacaacagatccctcatttggacactcatgtgaactccactccctggaaatgaaaaatagaagaga |
142 |
Q |
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| T |
3500663 |
gagccatcactagcatcaatgatgatttacatttcacaacagatccctcatttggacactcatgtgaactccactccctggaaatgaaaaatagaagaga |
3500762 |
T |
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| Q |
143 |
ctataataaagtgtgtatgtcctgaccatccttgacagtgaactccactccatccgatatttttacaagtgttccatcatcaaaga |
228 |
Q |
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| T |
3500763 |
ctataataaagtgtgtatgtcctgaccatccttgactgtgaactccactccatccgatatttttacgagtgttccatcatcaaaga |
3500848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 3500905 - 3500947
Alignment:
| Q |
226 |
agatgacaaaatcatctagcaaaatattaaatatgttagaagt |
268 |
Q |
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| T |
3500905 |
agatgacaaaatcatctagcaaaatattaaatatgttagaagt |
3500947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 3495559 - 3495621
Alignment:
| Q |
43 |
gagccatcattagcatcaatgatgatttacatttcacaacagatccctcatttggacactcat |
105 |
Q |
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| T |
3495559 |
gagccttcattagcatcaatcatgatttacattttacaacagctccatcatttggacgctcat |
3495621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 8627563 - 8627518
Alignment:
| Q |
49 |
tcattagcatcaatgatgatttacatttcacaacagatccctcatt |
94 |
Q |
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| T |
8627563 |
tcattagaatcaatgatgatttacatttcacaacagctccctcatt |
8627518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 8626985 - 8626927
Alignment:
| Q |
167 |
accatccttgacagtgaactccactccatccgatatttttacaagtgttccatcatcaa |
225 |
Q |
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| T |
8626985 |
accatccttcactgtgaactccaccccatcagatttttttacaagcgttccatcatcaa |
8626927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 2891483 - 2891522
Alignment:
| Q |
60 |
aatgatgatttacatttcacaacagatccctcatttggac |
99 |
Q |
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| T |
2891483 |
aatgatgatttacatttcacaagagctccctcatttggac |
2891522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 3143779 - 3143740
Alignment:
| Q |
60 |
aatgatgatttacatttcacaacagatccctcatttggac |
99 |
Q |
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| T |
3143779 |
aatgatgatttacatttcacaagagctccctcatttggac |
3143740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 3496055 - 3496116
Alignment:
| Q |
164 |
ctgaccatccttgacagtgaactccactccatccgatatttttacaagtgttccatcatcaa |
225 |
Q |
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| T |
3496055 |
ctgaccctccttcactgtgaactccactccatcagattttgctactagtgttccatcatcaa |
3496116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 14389627 - 14389688
Alignment:
| Q |
164 |
ctgaccatccttgacagtgaactccactccatccgatatttttacaagtgttccatcatcaa |
225 |
Q |
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| T |
14389627 |
ctgaccctccttcactgtgaactccactccatcagattttgctactagtgttccatcatcaa |
14389688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 2794694 - 2794658
Alignment:
| Q |
64 |
atgatttacatttcacaacagatccctcatttggaca |
100 |
Q |
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| T |
2794694 |
atgatttacatttcacaagagctccctcatttggaca |
2794658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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