View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_32 (Length: 278)
Name: NF1707_low_32
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 45641410 - 45641161
Alignment:
| Q |
18 |
agaacaatagctagtatgcaaacgccgttgtgacacattattaggaagtgcatacttcaatgcttttcatacatcatcaatcgtttaaggattatcagga |
117 |
Q |
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| T |
45641410 |
agaacaatagctagtatgcaaacgccgttgtgacacattagtaggaagtgcatacttcaatgcttttcatacatcatcaaccgtttaaggattatcagga |
45641311 |
T |
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| Q |
118 |
atttcagactcttgcgccctctctcgtgtcatctcaaatctcaatccagtaacacttcaagccaatcctcgggaattcccattgaaaaccctttgattat |
217 |
Q |
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| T |
45641310 |
atttcagactcttgcgccctctctcgtgtcatctcaaatctcaatccagtaacacttcaagccaatcctcgggaattccccttgaaaaccctttgattat |
45641211 |
T |
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| Q |
218 |
tccaagcagccagagctatctatacaacataagaccacaaacgacttcat |
267 |
Q |
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| T |
45641210 |
tccaagcagccagagctatctatacaacataagaccacaaacgacttcat |
45641161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 256
Target Start/End: Complemental strand, 45647837 - 45647643
Alignment:
| Q |
57 |
attaggaagtgcatacttcaatgcttttcatacatcatcaatcgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaat |
156 |
Q |
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| T |
45647837 |
attaggaaatgaagacttcaatgtttttcataccgcaccaagcattcaaggattatcaggaatttcagactcttgtgctctctctctt-----ctgtcat |
45647743 |
T |
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| Q |
157 |
ctcaatccagtaacacttcaagccaatcctcgggaattcccattgaaaaccctttgattattccaagcagccagagctatctatacaacataagaccaca |
256 |
Q |
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| T |
45647742 |
ctcaatccaataacacttcaagccagtcctcggaaattccctttgataaccctttggttattccaagcagccatagccatgtctacagcataagatcaca |
45647643 |
T |
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