View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_33 (Length: 255)
Name: NF1707_low_33
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 33857676 - 33857627
Alignment:
| Q |
150 |
gtacatgttggaaattttgtagaataaaatccatttgactacgctacttt |
199 |
Q |
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| T |
33857676 |
gtacatgttggaatttttgtagaataaaatccatttgactacgctacttt |
33857627 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 41048658 - 41048554
Alignment:
| Q |
19 |
cgattaaatgcacgtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaactgagggaaaagtctaacgtgtat |
118 |
Q |
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| T |
41048658 |
cgatcaaacgcacgtgagcacggctgtcaaggggagttttgggtaccttgatccagagtatttcaggaggcaacaactgacagaaaaatcagacgtatat |
41048559 |
T |
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| Q |
119 |
tcctt |
123 |
Q |
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||||| |
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| T |
41048558 |
tcctt |
41048554 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 22901431 - 22901367
Alignment:
| Q |
32 |
gtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaact |
96 |
Q |
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| T |
22901431 |
gtgagcacagctgtcaaagggagtttcggctaccttgatccggaatatttcagaaggcaacaact |
22901367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 22953099 - 22953035
Alignment:
| Q |
32 |
gtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaact |
96 |
Q |
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| T |
22953099 |
gtgagcacagctgtcaaagggagtttcggctaccttgatccggaatatttcagaaggcaacaact |
22953035 |
T |
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