View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_34 (Length: 255)
Name: NF1707_low_34
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 14756729 - 14756957
Alignment:
| Q |
13 |
atcctcgttaacggtggtaattttataacttcaaatgtcaaggtgaattgtatcaaccacaaccattactcatgcgctgtttttgttcttggaattccat |
112 |
Q |
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| T |
14756729 |
atcctcgttaacggtggtaattttataacttcaaatgtcaagatgaattgtatcaaccacaaccattactcatgcgctgtttttgttcttggaattccat |
14756828 |
T |
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| Q |
113 |
cagaatttcaccc----attatccttctcatttataacataaatcattacacttccttcctcttgttttggggtttgcacaatctttaactgcaatattg |
208 |
Q |
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| T |
14756829 |
cagattttcacccattaattatccttctcatttaatacataaatcattacacttccttcctcttgttttggggtttgcacaatctttaactgcaatattg |
14756928 |
T |
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| Q |
209 |
acccttcatgtctctcaaatcacgcctat |
237 |
Q |
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| T |
14756929 |
atccttcatgtctctgtaatcatgcctat |
14756957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 3612690 - 3612901
Alignment:
| Q |
13 |
atcctcgttaacggtggtaattttataacttcaa-atgtcaaggtgaattgtatcaaccacaaccattactcatgcgctgtttttgttcttggaattcca |
111 |
Q |
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||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
3612690 |
atcctcgttaacggtggcaatttcataacttcaacatgtcaaggtgaattgtatcaacaacaaccatt--------------tttgttcttggaattcca |
3612775 |
T |
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| Q |
112 |
tcagaatttcacccattatccttctcatttataacataaatcattacacttccttcctcttgttttggggtttgcacaatctttaactgcaatattgacc |
211 |
Q |
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| T |
3612776 |
tcagattttcacccattatccttctcatttaatacataaatctttacgcttccttcctcttgttttggggtttgcacaatctttaactgcaatattgacc |
3612875 |
T |
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| Q |
212 |
cttcatgtctctcaaatcacgcctat |
237 |
Q |
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| T |
3612876 |
cttcatgtctctcaaatcacgcctat |
3612901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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