View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_4 (Length: 593)
Name: NF1707_low_4
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_4 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 17 - 593
Target Start/End: Original strand, 36077633 - 36078227
Alignment:
| Q |
17 |
attccgttgcagtttctcttatatcttcaggtgaagttgatttcgaaaccggaagaagagaaactgaatcagggaaattgaacattgctgaagtaccatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36077633 |
attccgttgcagtttctcttatatcttcaggtgaagttgatttcgaaaccggaagaagagaaactgaatcagggaaattgaacattgctgaagtaccatg |
36077732 |
T |
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| Q |
117 |
aagtgctagaacagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgatttcttcttgtttggttcaagaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36077733 |
aagtgctagaacagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgatttcttcttgtttggttcaagaatt |
36077832 |
T |
|
| Q |
217 |
tcacaaacccatttgtttccattatttctttggcgaactcctttgtaaattgggtgccttgtctccttgaatttctttcttcctcnnnnnnnnnnnnnct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36077833 |
tcacaaacccatttgtttccattatttctttggcgaactcctttgtaaattgggtgccttgtctccttgaatttctttcttcctctttttgtttttttct |
36077932 |
T |
|
| Q |
317 |
tgtgtgagtttggttttgatggagaattttggttattggattgtgaagacaaataatgattcgtagattcattctccaagttcattctttgatacgttaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36077933 |
tgtgtgagtttggttttgatggagaattttggttattggattgtgaagacaaataatgattcgtagattcattctccaagttcattctttgatacgttaa |
36078032 |
T |
|
| Q |
417 |
tacatataatgaatttgactaatgaattgttgaatatacctgaatgtgttgggagtggtatttatatggaatagttattctagttttcatgggtggaaaa |
516 |
Q |
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| T |
36078033 |
tacatataatggatttgactaatgaattgttgaatatacctgaatgtgttgggagtggtatttatatggaatagttattctagttttcatgggtggaaaa |
36078132 |
T |
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| Q |
517 |
ttggaatctatgaatttgatgtctacaaagtttgag------------------ttggagattgcacgtgcaacacattgatgcattgtaatttt |
593 |
Q |
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| T |
36078133 |
atggaatctatgaatttgatgtctaaaaagtttgagggtgacaaaatgtcggagttggagattgcacgtgcaacacattgatgcattgtaatttt |
36078227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 36074564 - 36074630
Alignment:
| Q |
23 |
ttgcagtttctcttatatcttcaggtgaagttgatttcgaaaccggaagaagagaaactgaatcagg |
89 |
Q |
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|||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
36074564 |
ttgcagcttctcttatatcttcaagtgaagttgattttgaaactggaagaagagaaaccgaatcagg |
36074630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 444 - 548
Target Start/End: Original strand, 36074773 - 36074883
Alignment:
| Q |
444 |
tgttgaatatacctgaatgtgttgggagtggtatttatatggaatagtta----ttctagttttc--atgggtggaaaattggaatctatgaatttgatg |
537 |
Q |
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||||||||||||||||||||||||||||| |||||||||| || |||| | ||||||||||| |||| ||| ||| || ||| ||||||| ||||| |
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| T |
36074773 |
tgttgaatatacctgaatgtgttgggagtagtatttatatagattagtaagtagttctagttttcatatggttgggaaaatgaaatatatgaatgtgatg |
36074872 |
T |
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| Q |
538 |
tctacaaagtt |
548 |
Q |
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|||| |||||| |
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| T |
36074873 |
tctaaaaagtt |
36074883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 36074656 - 36074717
Alignment:
| Q |
349 |
ttattggattgtgaagacaaataatgattcgtagattcattctccaagttcattctttgata |
410 |
Q |
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|||||||| ||||||||| ||||||| || |||||||||||||||||||||||||| |||| |
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| T |
36074656 |
ttattggacggtgaagacagataatgactcatagattcattctccaagttcattcttagata |
36074717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 43561811 - 43561877
Alignment:
| Q |
128 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgattt |
194 |
Q |
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|||| |||||||| ||| ||||||||||||| || |||| ||||||||| ||||| |||| |||||| |
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| T |
43561811 |
cagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattt |
43561877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 505546 - 505618
Alignment:
| Q |
128 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgatttcttctt |
200 |
Q |
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| T |
505546 |
cagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattcttgattttttctt |
505618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 4268757 - 4268693
Alignment:
| Q |
130 |
gctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgattt |
194 |
Q |
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| T |
4268757 |
gctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattt |
4268693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 16357821 - 16357890
Alignment:
| Q |
128 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgatttctt |
197 |
Q |
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| T |
16357821 |
cagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctt |
16357890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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