View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_45 (Length: 236)
Name: NF1707_low_45
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28465177 - 28465396
Alignment:
| Q |
1 |
ttagtagctaattttgannnnnnncaataaaagtgcgagggactaattttgctcaaaaatgttatgcgtcaacaattttttccagggtccccnnnnnnnc |
100 |
Q |
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| T |
28465177 |
ttagtagctaattttgatttttttcaataaaagtgcgagggactaattttgctcaaaaatgttatgcgtcaacaattttttccagggtccccaaaaaaac |
28465276 |
T |
|
| Q |
101 |
aaaannnnnnncccaaggtgacatagtaaccaacatgttagcaccaatcggtcaaatatgactcaaaattaatagagtgaataatttgtggtcatataaa |
200 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28465277 |
aaattttttttcccaaggtaacatagtaaccaacatgttagcaccaatcggtcaaatatgactcaaaattaatagagtgaataatttgtggtcatataaa |
28465376 |
T |
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| Q |
201 |
aatgttaacaacgtcgttat |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
28465377 |
aatgttaacaacgtcgttat |
28465396 |
T |
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