View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1707_low_47 (Length: 233)
Name: NF1707_low_47
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 8694283 - 8694498
Alignment:
| Q |
1 |
actaactatgctagtggggagcataacaaaccaccaaaacaaagcaaattacaagcagtctaaattgataatgacattaatattcagctctttcttttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8694283 |
actaactatgctagtggggagcataacaaaccaccaaaacaaagcaaattacaagcagtctaaattgataatgacattaatattcagctctttcttttgg |
8694382 |
T |
|
| Q |
101 |
cacacgttaatattttgcttctcataggaaaagaccagagcaaattatcattgtttattgacttgttcaaagtgcaagttcaatatattagcaataatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8694383 |
cacacgttaatattttgcttctcataggaaaagaccagagcaaattatcattgtttattgacttgttcaaagtgcaagttcaatatattagcaataatgg |
8694482 |
T |
|
| Q |
201 |
aaacaatgacttgtgt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8694483 |
aaacaatgacttgtgt |
8694498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 8701602 - 8701754
Alignment:
| Q |
1 |
actaactatgctagtggggagcataacaaacca----ccaaaacaaagcaaattacaagcagtctaaattgataatgacatta----atattcagctctt |
92 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
8701602 |
actaactacgttagtggggagcataacaaaccaaccaccaaaacaaagcaaatttcaagcagtttaatttgataatgacattaattaatattcagctctt |
8701701 |
T |
|
| Q |
93 |
tcttttggcacacgttaatattttgcttctcataggaaaagaccagagcaaat |
145 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||| ||||||| |||||||| ||||| |
|
|
| T |
8701702 |
tcttttggtacatgttaatattctgcttctgataggaagagaccagatcaaat |
8701754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University