View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_49 (Length: 228)
Name: NF1707_low_49
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39744720 - 39744943
Alignment:
| Q |
1 |
ttgaatccaagttcactcgatcaattacaacttgatggtaatggtaaatatttgggtcctttgatcaaaatagctttgactgttgctattatttcaacca |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39744720 |
ttgaatccaagttcactcaatcaattacaacttgatggtaatggtaaatatttgggtcctttgatcaaaatagctttgactgttgctattatttcaacca |
39744819 |
T |
|
| Q |
101 |
cggtagggtaccctaaactatttatgttaattaataataattgattttaatgatagtagttttactaactatattgtataaccatatgttagcaatctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39744820 |
cggtagggtaccctaaactatttatgttaattaataataattgattttaatgatagtagttttactaactatattgtataaccatatgttagcaatctgt |
39744919 |
T |
|
| Q |
201 |
agctgttggaagattatatgcatc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39744920 |
agctgttggaagattatatgcatc |
39744943 |
T |
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