View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_50 (Length: 227)
Name: NF1707_low_50
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 39157722 - 39157921
Alignment:
| Q |
10 |
agaagcaaaggatagcaatagctagagcaatgttgaagaatccaccaatacttctgttagatgaggcaacaagtgctcttgacagtgtatcagagaatct |
109 |
Q |
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| T |
39157722 |
agaagcaaaggatagcaatagctagagcaatgttgaagaatccaccaatacttctgttagatgaggcaacaagtgctcttgacagtgtatcagagaatct |
39157821 |
T |
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| Q |
110 |
tgtacaagaagcattggagaaaatgatggttggaagaacatgtgtagttatagctcaccgtttgtcaacaatacaaagtgttgattccatagcagtgatt |
209 |
Q |
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| T |
39157822 |
tgtacaagaagcattggagaaaatgatggttggaagaacatgtgtagttatagctcaccgtttgtcaacaatacaaagtgttgattccatagctgtgatt |
39157921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 31442528 - 31442635
Alignment:
| Q |
45 |
aagaatccaccaatacttctgttagatgaggcaacaagtgctcttgacagtgtatcagagaatcttgtacaagaagcattggagaaaatgatggttggaa |
144 |
Q |
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| T |
31442528 |
aagaatccagcaattcttcttctggatgaagctacaagtgcacttgatagtgcatcagaggttttagtccaagaagcacttgagaaaataatggttggaa |
31442627 |
T |
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| Q |
145 |
gaacatgt |
152 |
Q |
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| T |
31442628 |
gaacatgt |
31442635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 17870300 - 17870262
Alignment:
| Q |
15 |
caaaggatagcaatagctagagcaatgttgaagaatcca |
53 |
Q |
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| T |
17870300 |
caaaggatagcaatagctagagccatgttgaagaatcca |
17870262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 2451154 - 2451195
Alignment:
| Q |
12 |
aagcaaaggatagcaatagctagagcaatgttgaagaatcca |
53 |
Q |
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| T |
2451154 |
aagcaaaggattgcaatagctagagctatattgaagaatcca |
2451195 |
T |
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