View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_52 (Length: 220)
Name: NF1707_low_52
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 33309340 - 33309148
Alignment:
| Q |
13 |
gcaaagggtttgaggtaaatagatggaataacaaaaat-gatcatttttgttcttgaaataaaagtttgacaattccatcctcaattttttaaaatagca |
111 |
Q |
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| T |
33309340 |
gcaaagggtttgaggtaaatagatggaataacaaaaattgatcatttt-gttcttgaaataaaagtgtgacaattccatcatcaattttttaaaatagca |
33309242 |
T |
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| Q |
112 |
aaaaccatgactccatgctcctt-nnnnnnnnctccaagtcatctcaagattgttagagatagcttctagctctgcattcgtattggtagtaat |
204 |
Q |
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| T |
33309241 |
aaaaccatgactccatgctccttaaaaaaaaactccaagtcatctcaagattgttagagatagcttccagctctgcattcgtattgatagtaat |
33309148 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 22081744 - 22081780
Alignment:
| Q |
168 |
agatagcttctagctctgcattcgtattggtagtaat |
204 |
Q |
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| T |
22081744 |
agatagcttgtagctctgcattcatattggtagtaat |
22081780 |
T |
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