View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1707_low_53 (Length: 207)
Name: NF1707_low_53
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 34549817 - 34550014
Alignment:
| Q |
1 |
cgtaacaaaaggtcttcatctctgggcagtcatcaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacattt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34549817 |
cgtaccaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacattt |
34549916 |
T |
|
| Q |
101 |
gaggctaggaagcttctctagtaatatttcctccaatattggaaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
34549917 |
gaggctaggaagcttctctagtaatatttcctccaatattggaaatttaatcttagctttctgttgtgaacaattattcctaatgatctccttcatct |
34550014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 34377558 - 34377366
Alignment:
| Q |
6 |
caaaaggtcttcatctctgggcagtcatcaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggc |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||| |||||||| |||||||||||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
34377558 |
caaaaggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaatggaaagagctttcactgaaacatttgaggc |
34377459 |
T |
|
| Q |
106 |
taggaagcttctctagtaatatttcctccaatattggaaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
198 |
Q |
| |
|
|||||||||||| |||| |||| | || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34377458 |
taggaagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
34377366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 135063 - 134952
Alignment:
| Q |
6 |
caaaaggtcttcatctctgggcagtcatcaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggc |
105 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| | ||||| ||||||||||| ||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
135063 |
caaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacatttgaggc |
134964 |
T |
|
| Q |
106 |
taggaagcttct |
117 |
Q |
| |
|
|||||||||||| |
|
|
| T |
134963 |
taggaagcttct |
134952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University