View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_6 (Length: 489)
Name: NF1707_low_6
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 219 - 474
Target Start/End: Complemental strand, 24631594 - 24631342
Alignment:
| Q |
219 |
tagtgggttgtggaaaatgtgatagtggcaaacaaaagagggatttaatggttagttcaaaaggcgttttatattagatatcaattaatgaaagcaaaat |
318 |
Q |
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| T |
24631594 |
tagtgggttatggaaaatgtgatagtggcaaacaaaagaggaatttaatggttagttcaaaaggcgttttatattggatatcaattaatgaaagcaaaat |
24631495 |
T |
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| Q |
319 |
taaatcaagaatattgtcggtggcttagtggtcaaaatattgagatggacgggattagtgttaattaggtctacttgcagaaccatctaacatttattat |
418 |
Q |
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| T |
24631494 |
taaatcaagaatattgtcggtggcttagtggtcaaaatattgagatggacggaattagtgttaatcagggctacttgcagaaccatctaatatttattat |
24631395 |
T |
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| Q |
419 |
aacaaagattaagataactgttagtaatatttatgatctttatagtgcttgtatgt |
474 |
Q |
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| T |
24631394 |
aacaaagattaagataattgt---taatatttataatctttatggtgcttgtatgt |
24631342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 184 - 363
Target Start/End: Original strand, 8571990 - 8572169
Alignment:
| Q |
184 |
tgtgtgggttgtgctagtagaaattaatagggggttagtgggttgtggaaaatgtgatagtggcaaacaaaagagggatttaatggttagttcaaaagg- |
282 |
Q |
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| T |
8571990 |
tgtgtgggttgtgatagtagaaattaacaggtggttagtggattttggataatgtgatagtggaaaacgaaaaagggatttaatggtttgttaaaaaggg |
8572089 |
T |
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| Q |
283 |
cgttttatattagatatcaattaatgaaagcaaaattaaatcaagaatattgtcggtggcttagtggtcaaaatattgaga |
363 |
Q |
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| T |
8572090 |
caattgatattggatatcaattaatggaaacaaaattaattaaaaaa-attgctagtggcttagtggtcaaaatgttgaga |
8572169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 365
Target Start/End: Original strand, 32137287 - 32137437
Alignment:
| Q |
216 |
ggttagtgggttgtggaaaatgtgatagtggcaaacaaaagagggatttaatggttagttcaaaa-ggcgttttatattagatatcaattaatgaaagca |
314 |
Q |
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| T |
32137287 |
ggttagtggattatggataatgtgatagtgggtaacaaaagagagatttactggtttgttaaaaagggtatttgatattggatatcaattaatggaagca |
32137386 |
T |
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| Q |
315 |
aaattaaatcaagaatattgtcggtggcttagtggtcaaaatattgagatg |
365 |
Q |
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| T |
32137387 |
taaccatatcaagaaaattggcagtggcttagtgatcataatgttgagatg |
32137437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 367
Target Start/End: Original strand, 6667010 - 6667088
Alignment:
| Q |
289 |
atattagatatcaattaatgaaagcaaaattaaatcaagaatattgtcggtggcttagtggtcaaaatattgagatgga |
367 |
Q |
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| T |
6667010 |
atattggatatggattaatggaagcaaaattaattcaagaaaattgctagtggcttagtggtcaaaatgttgagatgga |
6667088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 37072959 - 37072872
Alignment:
| Q |
260 |
gatttaatggttagttcaaaagg-cgttttatattagatatcaattaatgaaagcaaaattaaatcaagaatattgtcggtggcttag |
346 |
Q |
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| T |
37072959 |
gatttaatgatttgtttaaaagggcgattgatattggatatcaattaatggaagcaaaattaaatcaagaaaattgtcggtggcttag |
37072872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 1068772 - 1068705
Alignment:
| Q |
200 |
gtagaaattaatagggggttagtgggttgtggaaaatgtgatagtggcaaacaaaagagggatttaat |
267 |
Q |
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| T |
1068772 |
gtagaaattaataggtggttagtgggttatggataatgtgatagtgggaaacgaaaaagagatttaat |
1068705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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