View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_8 (Length: 435)
Name: NF1707_low_8
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 657349 - 657757
Alignment:
| Q |
19 |
gcattaactgacagctcaggattaattgtttgcttcatgacagtggcatattcaataagctcatttgctgcctccttattcttctggtgtttctcatcat |
118 |
Q |
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| T |
657349 |
gcattaactgacagctcaggattaattgtttgcttcatggcagtggcatattcaataagctcatttgctgcctccttattcttctggtgtttctcatcat |
657448 |
T |
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| Q |
119 |
cagatttgtacttagaagcttggttaatcatcttctcgatctcctcttcagaaaatcttcccttgaaattttcaatggtaattttgttgcttgttccaga |
218 |
Q |
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| T |
657449 |
cagatttgtacttagcagcttggttaatcatcttctcgatctcctcttcagaaaatcttcccttgaaattttcaatggtaattttgttgcttgttccaga |
657548 |
T |
|
| Q |
219 |
agagctctctgtcgcagaaatagttaaggcaccatctgaacttatatcgaagcgaagagtgatagtgggaacaccacatttagcaggaggaatgccaa-g |
317 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
657549 |
agagctctctgttgcagaaatagttaaggcaccatctgaacttatatcgaagccaagagtgatagtgggaacaccacatttagcaggaggaatgccaagg |
657648 |
T |
|
| Q |
318 |
agttctaattctcctagtttagtgtttctgttaacactttgttcatctccttcatagatcgaaaaacacatttcattttgattatcttgaaccgttgtga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
657649 |
agttctaattctcctagtttagtgtttctgttaacactttgttcatctccttcatagatcaacaaacacatttcattttgattatcttgaaccgttgtga |
657748 |
T |
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| Q |
418 |
tattcttcg |
426 |
Q |
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| T |
657749 |
tattcttcg |
657757 |
T |
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