View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707_low_9 (Length: 434)
Name: NF1707_low_9
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 2488388 - 2488798
Alignment:
| Q |
18 |
catgcaagtgttagagaagatttctttgtgggtgatttaaagcattggttaagttttaatatgagcaaagatgtggggtggagtatgaaggtcgagtgga |
117 |
Q |
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| T |
2488388 |
catgcaagtgttagagaagatttctttgtgggtgatttaaagcattggttaagttttaatatgagcaaagatgtgggttggagtatgaaggtcgagtgga |
2488487 |
T |
|
| Q |
118 |
aggatttttgggaaatggcgtaccattttttgtggtatttgagaaataagaaaaatcgtgaagaacattttcataggttaatttacctgatacatgatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
2488488 |
aggatttttgggaaatggcgtaccattttttgtggtatttgagaaataagaaaaatcgtgaagaacattttcataggtcaatttacccgatacatgatgt |
2488587 |
T |
|
| Q |
218 |
tttgaagcgcatttgagattattatattttgatgttctctcatgcaagtgttctaattggttgggagcctctagtggaaagttaggttaagttgatcatt |
317 |
Q |
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| T |
2488588 |
tttgaagcgcatttgagattattatattttgatgtcctctcgtgcaagtgttctaattggttgggagcctccagcggaaagttaggttaagttgatcatt |
2488687 |
T |
|
| Q |
318 |
gatggctcttgtagtgatatgg----gcaacttgtggcggtgtgattcgagggggtgatggtgaatggttaaggggttttgcaaaaaatattggtttgtg |
413 |
Q |
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| T |
2488688 |
gatggctcttgtagtgatatgggactgcaacttgtggcggtgtgattcgagggggtgatggtgaatggttaaggggttttgcgaaaaatattggtttgtg |
2488787 |
T |
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| Q |
414 |
tggtgcctatg |
424 |
Q |
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| T |
2488788 |
tggtgcctatg |
2488798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 26816278 - 26816331
Alignment:
| Q |
355 |
gtgattcgagggggtgatggtgaatggttaaggggttttgcaaaaaatattggt |
408 |
Q |
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| T |
26816278 |
gtgattcgagggagtaatggtgaatggtttgggggtttcgcaaaaaatgttggt |
26816331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 12623299 - 12623167
Alignment:
| Q |
24 |
agtgttagagaagatttc-tttgtgggtgatttaaagcattggttaagttttaatatgagcaaagatgtggggtggagtatgaaggtcgagtggaaggat |
122 |
Q |
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|||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
12623299 |
agtgctagagaagaattcctttgtggatgatttaaagcattggttaagttttaatacgagtgaagatgttgggtggagtatgaaggtcgagtggaaggac |
12623200 |
T |
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| Q |
123 |
ttttgggaaatggcgtaccattttttgtggtat |
155 |
Q |
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| T |
12623199 |
ttttgggcaatggcgtgccattgtttgtggtat |
12623167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 10780132 - 10780192
Alignment:
| Q |
354 |
tgtgattcgagggggtgatggtgaatggttaaggggttttgcaaaaaatattggtttgtgt |
414 |
Q |
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||||||| ||||| ||||||||||||||||| | || |||||||| ||||||||| ||||| |
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| T |
10780132 |
tgtgatttgagggagtgatggtgaatggttaggtggctttgcaaacaatattggtatgtgt |
10780192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 47182305 - 47182349
Alignment:
| Q |
357 |
gattcgagggggtgatggtgaatggttaaggggttttgcaaaaaa |
401 |
Q |
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| T |
47182305 |
gattcgagggaatgatggtgaatggttagtgggttttgcaaaaaa |
47182349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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