View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1708-Insertion-1 (Length: 276)
Name: NF1708-Insertion-1
Description: NF1708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1708-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 64 - 276
Target Start/End: Complemental strand, 10766525 - 10766316
Alignment:
| Q |
64 |
acaatgatattatgattttgttgaagagtttacgtcaaaatcacaatgatatataatgattctgataatcttcctgtcaatttaaatttgcactcagtcg |
163 |
Q |
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| T |
10766525 |
acaatgatattgtgattttgtagaagagtttacgtcaaaatcacattgatatataatgattctgataatcttccggtcaattcaaacttgcactcagtcg |
10766426 |
T |
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| Q |
164 |
attgtactttccttaatattagtattattccatttcatttcaataagtatgattgtaaccatattatatcattgaattttgtatagttgattagtttgat |
263 |
Q |
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| T |
10766425 |
attgtattttccttaatattagtattattccatttcatttcaataagtatgattgtaacca---tatatcattgaattttgtatagttgattagtttgat |
10766329 |
T |
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| Q |
264 |
agggtagggaata |
276 |
Q |
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| T |
10766328 |
agggtagggaata |
10766316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 10766651 - 10766571
Alignment:
| Q |
8 |
acgtggactgcaaatgagcttatctcaatattctcaaaaagaagcatacaattaaaacaatgatattatgattttgttgaa |
88 |
Q |
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| T |
10766651 |
acgtggactgcaaatgagcttatctcaatattctcaaaaagaagcatacaattaaaacaataatattatgattttgttgaa |
10766571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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