View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1708-Insertion-4 (Length: 933)

Name: NF1708-Insertion-4
Description: NF1708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1708-Insertion-4
NF1708-Insertion-4
[»] chr3 (1 HSPs)
chr3 (8-933)||(51105783-51106710)
[»] chr2 (1 HSPs)
chr2 (16-53)||(37222280-37222317)


Alignment Details
Target: chr3 (Bit Score: 884; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 884; E-Value: 0
Query Start/End: Original strand, 8 - 933
Target Start/End: Complemental strand, 51106710 - 51105783
Alignment:
Q  8 ttttcaacctaacaaataatcagttttgctactggaaatctggcattgtttcaaacatctacaaagtaaaacttgaaatataaaatgaatcagtaattta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51106710 ttttcaacctaacaaataatcagttttgctactggaaatctggcattgtttcaaacatctacaaagtaaaacttgaaatataaaatgaatcagtaattta 51106611  T
Q  108 ttttaataaaacgaataggaatgcgatataaaagtaatagttaaagactaaagttttaactcacaacaggatgaaaatatagtggttcccgcttctttat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51106610 ttttaataaaacgaataggaatgcgatataaaagtaatagttaaagactaaagttttaactcacaacaggatgaaaatatagtggttcccgcttctttat 51106511  T
Q  208 gaagaatttcacacaagtggaaaattccaaatgacgtctaggttgttctctgtaatccattttttaggatagaaggaataagatgactcgagatcaatat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51106510 gaagaatttcacacaagtggaaaattccaaatgacgtctaggttgttctctgtaatccattttttaggatagaaggaataagatgactcgagatcaatat 51106411  T
Q  308 tccaaaccataactctcgagcagtcgttcattaggccctccatttcactttcatctttaacaatctgctcaatcaatgtgctaacctgcatatagcgaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51106410 tccaaaccataactctcgagcagtcgttcattaggccctccatttcactttcatctttaacaatctgctcaatcaatgtgctaacctgcatatagcgaaa 51106311  T
Q  408 aaataaataaattcacaattgatcaaaacatcatatcaggtttgatcaatcatcagtaagctacattttttgtttcgctcaacaggagaggatagccata 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51106310 aaataaataaattcacaattgatcaaaacatcatatcaggtttgatcaatcatcagtaagctacattttttgtttcgctcaacaggagaggatagccata 51106211  T
Q  508 acatgtgggtatgtagaacatcccccgaccgcaaggaacaaatgttacataatcagaaattccgatacatttcagctgcagaccaatttcaacaagttga 607  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51106210 acatgtgggtatgtagaagatcccccgacctcaagggacaaatgttacataatcagaaattccgatacatttcagctgcagaccaatttcaacaagttga 51106111  T
Q  608 gttggatacagaaaatgatatactatactatactacactatcctatactgtataatatgtaagaacaccaaagaagaaaatatgctaagttaccaaccca 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51106110 gttggatacagaaaatgatatactatactatactacactatcctatactgtataatatgtaagaacaccaaagaagaaaatatgctaagttaccaaccca 51106011  T
Q  708 caaattttccttgactgattcgagctgcctgataggtttaagagatggtcggtgccgcttctttggatcccatagtattgtactattgaaggcaaagcct 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  51106010 caaattttccttgactgattcgagctgcctgataggtttaagagacggtcggtgccacttctttggatcccatagtattgtactattgaaggcgaagcct 51105911  T
Q  808 tgcatttcagcatgaaatcttttagaattcccacctgattcattatttgtgtgccatccaatcacttcacttccattac-aatgggcccttgc-agagaa 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  51105910 tgcatttcagcatgaaatcttttagaattcccacctgattcattatttgtgtgccatccaatcacttcacttccattacaaatgggcccttgcaagagaa 51105811  T
Q  906 tgccacttctatcctttgataatcttgc 933  Q
    |||| |||||||||||||||||||||||    
T  51105810 tgccgcttctatcctttgataatcttgc 51105783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 37222317 - 37222280
Alignment:
Q  16 ctaacaaataatcagttttgctactggaaatctggcat 53  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  37222317 ctaacaaagaatcaattttgctactggaaatctggcat 37222280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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