View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1708-Insertion-6 (Length: 302)

Name: NF1708-Insertion-6
Description: NF1708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1708-Insertion-6
NF1708-Insertion-6
[»] chr5 (1 HSPs)
chr5 (7-302)||(2387258-2387541)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 2387258 - 2387541
Alignment:
Q  7 agttgtgacacaatgtcaacggaaaaagtgtgtgttatttaaggtgtaaaaagcatgatgttgtagttgctatcagatcaggtagtaagttgttaatgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||            || |||||||||    
T  2387258 agttgtgacacaatgtcaacggaaaaagtgtgtgttatttaaggtgtaaaaagcatgatgttgtagttggtatcag------------gtagttaatgtt 2387345  T
Q  107 tttcctaacttatttaatgtagatctgaccaaagaatgtagtgtaatctattagtagtagtacataaagtagggaagtaataatggaaataagcgttatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2387346 tttcctaacttatttaatgtagatctgaccaaagaatgtagtgtaatctattagtagtagtacataaagtagggaagtaataatggaaataagcgttatg 2387445  T
Q  207 attatgattaatgagaaatcatggtgataggtgaaaaatgggatccaatgttaaggtaacagtgaatagaataatagtgttagctagggttgttgg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2387446 attatgattaatgagaaatcatggtgataggtgaaaaatgggatccaatgttaaggtaacagtgaatagaataatagtgttagctagggttgttgg 2387541  T

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