View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1708-Insertion-7 (Length: 939)
Name: NF1708-Insertion-7
Description: NF1708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1708-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 807; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 18 - 939
Target Start/End: Original strand, 3284054 - 3284978
Alignment:
| Q |
18 |
tatatatatatcatgcaacaacaagaaacaatctatccttcaaacatgaaattcagaatctgagtccttattcnnnnnnnnn-atgaacgtgaaaacaat |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3284054 |
tatatatatatcatgcaacaacaagaaacaatatatccttcaaacatgaaattcagaatctgagtccttatttttttttttttatgaacgtgaaaacaat |
3284153 |
T |
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| Q |
117 |
tttattcttagaacttgtctttcattgaaaaggatccatcgaaatcaattaacataataacctatgttgatcaagggacccaataaataatccatatcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284154 |
tttattcttagaacttgtctttcattgaaaaggatccatcgaaatcaattaacataataacctatgttgatcaagggacccaataaataatccatatcca |
3284253 |
T |
|
| Q |
217 |
ccaactctgtcgtgtctcttttttactattgcataatgtcgtcgatttcatatcattgtcgttatttactctaattgaataagtgtccgttaacattatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3284254 |
ccaactctgtcgtgtctcttttttactattgcataatgtcgtcgatttcatatcattgtcgttatttactctaattgaataagtgtccattaacattatt |
3284353 |
T |
|
| Q |
317 |
aatcatgttttattctttgaaactaacaaacaaaagaacaataattggtaaacagtgttttcagtggaatttataatcccagttaatgcagtgcagttcc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3284354 |
aatcatgttttattctttgaaactaacaaacaaaagaacaataattggtaaacagtgttttcagtggaatttataatcccagttaatgcaatgcagttcc |
3284453 |
T |
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| Q |
417 |
tcactctggtcaggtggaatataaactctgctacaaaacaaaacatgtattcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatct |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284454 |
tcactctggtcaggtggaatataaactctgctacaaaacaaaacatgtattcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatct |
3284553 |
T |
|
| Q |
517 |
ttcactctttcatgttcgaagacctccaatctatgtaccatgctcgaccaacctttcttctatattctcaattccttcgggttcacacttcctacgaagt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3284554 |
ttcactctttcatgttcgaagacctccaatctatgtaccatgctcgaccaacctttcttctatattctcaattccttcgggttcacacttcctaagaagt |
3284653 |
T |
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| Q |
617 |
aactcagtctctcattgtgtatacacccatttcttttcttccacgttttctatatacaaagaataatcaattattttagcctcgttgtttttgttgttgg |
716 |
Q |
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| T |
3284654 |
aactcaatctctcattgtgtatacacccatttcttttcttccacgttttctatatacaaagaataatcaattattttagcctcgttgtttttgttgttgg |
3284753 |
T |
|
| Q |
717 |
cttcacagagtacaggagctccaagtttcttctcaaatgcgcttcgctaaactcttca-gttccctgacacctgatccaatcccacaggtactttcctat |
815 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284754 |
cttcacagagtacaggagctccaagtttcttctcaaatgcgcgtcgctaaactcttcaggttccctgacacctgatccaatcccacaggtactttcctat |
3284853 |
T |
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| Q |
816 |
catttcttgctccacagccatggacaaatatgtgaactatgaggcatgggacatgtctctagctggtgnnnnnnnnncttctggatgatcac-acacgct |
914 |
Q |
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| T |
3284854 |
catttcttgctccacagccatggacaaatatgtgaactatgaagcatgggacatgtctctagctggtgttttttttctttctggatgatgacaacacgct |
3284953 |
T |
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| Q |
915 |
ttggtcctttggatgctaactcatt |
939 |
Q |
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| T |
3284954 |
ttggtcctttggatgctaactcatt |
3284978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 381 - 583
Target Start/End: Complemental strand, 32752981 - 32752776
Alignment:
| Q |
381 |
tggaatttataatcccagttaatgcagtgcagttcctcactct--------ggtcaggtggaatataaactctgctacaaaacaaaacatgtattcaatt |
472 |
Q |
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|||||| ||||||||||||||||||| | ||||||||||||| ||||| || |||||||||||||||| ||||||| || |||||||| |
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| T |
32752981 |
tggaatctataatcccagttaatgcaccgtagttcctcactctatctagctggtcaagttgaatataaactctgcttcaaaaca-----tgcattcaatt |
32752887 |
T |
|
| Q |
473 |
tcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcatgttcgaagacctccaatctatgtaccatgctcgaccaaccttt |
572 |
Q |
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| | |||||||||||||| ||||||| ||||||||||| | ||||||||||||| ||||| || || |||||| ||||| ||||| |||||||| ||| |
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| T |
32752886 |
tgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgtttgatcacatccaatttatgtgccatgttcgaccaatgttt |
32752787 |
T |
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| Q |
573 |
cttctatattc |
583 |
Q |
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| T |
32752786 |
cttctaaattc |
32752776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 32722401 - 32722301
Alignment:
| Q |
214 |
ccaccaactctgtcgtgtct--cttttttactattgcataatgtcgtcgatttcatatcattgtcgttatttactctaattgaataagtgtccgttaaca |
311 |
Q |
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|||||||||||||||||||| || ||||| |||||| ||| ||||| |||||||||||| |||||||||| ||||||| ||| |||||||||| |||| |
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| T |
32722401 |
ccaccaactctgtcgtgtctatctcttttatgattgcacaatatcgtccatttcatatcatcgtcgttattttctctaatagaaaaagtgtccgtaaaca |
32722302 |
T |
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| Q |
312 |
t |
312 |
Q |
| |
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| T |
32722301 |
t |
32722301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 32730856 - 32730756
Alignment:
| Q |
214 |
ccaccaactctgtcgtgtct--cttttttactattgcataatgtcgtcgatttcatatcattgtcgttatttactctaattgaataagtgtccgttaaca |
311 |
Q |
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|||||||||||||||||||| || ||||| |||||| ||| ||||| |||||||||||| |||||||||| ||||||| ||| |||||||||| |||| |
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| T |
32730856 |
ccaccaactctgtcgtgtctatctcttttatgattgcacaatatcgtccatttcatatcatcgtcgttattttctctaatagaaaaagtgtccgtaaaca |
32730757 |
T |
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| Q |
312 |
t |
312 |
Q |
| |
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| T |
32730756 |
t |
32730756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 632 - 737
Target Start/End: Complemental strand, 32752727 - 32752622
Alignment:
| Q |
632 |
tgtgtatacacccatttcttttcttccacgttttctatatacaaagaataatcaattatttta-gcctcgttgtttttgttgttggcttcacagagtaca |
730 |
Q |
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| T |
32752727 |
tgtgtatacaaccatttctttt-ttccacgctttctatctacaaataacactcgatcattttatgcctacttgcttttgttgttggtttcgcagagtaca |
32752629 |
T |
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| Q |
731 |
ggagctc |
737 |
Q |
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| T |
32752628 |
ggagctc |
32752622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 32722450 - 32722412
Alignment:
| Q |
179 |
tatgttgatcaagggacccaataaataatccatatccac |
217 |
Q |
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| T |
32722450 |
tatgttgatcaggggacccaataaaaaatccatatccac |
32722412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 32730905 - 32730867
Alignment:
| Q |
179 |
tatgttgatcaagggacccaataaataatccatatccac |
217 |
Q |
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| T |
32730905 |
tatgttgatcaggggacccaataaaaaatccatatccac |
32730867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 32747778 - 32747740
Alignment:
| Q |
179 |
tatgttgatcaagggacccaataaataatccatatccac |
217 |
Q |
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||||||||||| ||||||||||||| ||||||||||||| |
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| T |
32747778 |
tatgttgatcaggggacccaataaaaaatccatatccac |
32747740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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