View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_high_11 (Length: 489)

Name: NF17080_high_11
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_high_11
NF17080_high_11
[»] chr6 (4 HSPs)
chr6 (18-472)||(20432895-20433341)
chr6 (18-315)||(20400815-20401114)
chr6 (384-472)||(20400438-20400528)
chr6 (320-360)||(20400548-20400588)
[»] chr7 (4 HSPs)
chr7 (281-351)||(3584111-3584181)
chr7 (286-351)||(13703282-13703347)
chr7 (286-351)||(13640901-13640966)
chr7 (311-351)||(31177354-31177394)
[»] chr4 (3 HSPs)
chr4 (281-351)||(4815856-4815926)
chr4 (281-334)||(10981670-10981723)
chr4 (311-351)||(12294320-12294360)
[»] scaffold0259 (1 HSPs)
scaffold0259 (384-477)||(18310-18403)
[»] chr1 (4 HSPs)
chr1 (280-351)||(11067121-11067192)
chr1 (288-351)||(40780780-40780843)
chr1 (384-468)||(21243082-21243167)
chr1 (311-351)||(15883242-15883282)
[»] chr8 (4 HSPs)
chr8 (281-351)||(15920032-15920102)
chr8 (288-333)||(16936360-16936405)
chr8 (281-351)||(6235022-6235092)
chr8 (384-470)||(26575358-26575444)
[»] chr2 (4 HSPs)
chr2 (281-351)||(14690132-14690202)
chr2 (384-472)||(24473468-24473556)
chr2 (288-348)||(33133693-33133753)
chr2 (281-351)||(20110955-20111025)
[»] scaffold0013 (1 HSPs)
scaffold0013 (287-351)||(96990-97054)
[»] chr3 (1 HSPs)
chr3 (294-346)||(22354749-22354801)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 20433341 - 20432895
Alignment:
Q  18 gtatagagatgagaatggatggcgtttggtcccaactgaaaatgatccctttagggttgtatttattgatgctactgaatctgaaaaagctatagtttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20433341 gtatagagatgagaatggatggcgtttggtcccaactgaaaatgatccctttagggttgtatttattgatgctactgaatctgaaaaagctgtagtttga 20433242  T
Q  118 atcaaatttccaagctagggttactgaataatatttatgtaataatcatagctctattaaggttgtgcatcttacaagcccccctataaagagcttgtgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  20433241 atcaaatttccaagctagggttactgaataatatttatgtaataaaaatagctctattagggttgtgcatcttacaggcccccttataaagagcttgtgt 20433142  T
Q  218 aaataagtcttttggtcttaaagatatttgaaatttagttatgttcattgaattttggcttatttttct--gttattccaattatatccttaggtaaatt 315  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| | ||   |||||   |||||||||||||||||||| |||||||    
T  20433141 aaataagtcttttgttcttaaagatatttgaattttggttatgttcattgaattttaggttgactttcttgtttattccaattatatccttaagtaaatt 20433042  T
Q  316 ttcttataataatattatactgttcgtgttattaaatacataaaataccaacnnnnnnnnnnnnnnnntctttcacaccataatgtctcttcaccgtgca 415  Q
    ||| ||||||||||||||| ||||| |||||||||||||||||||||||||                 |||||||||||| | | |||||||||||| ||    
T  20433041 ttcctataataatattatattgttcctgttattaaatacataaaataccaa----------aaaaaaatctttcacaccacagtatctcttcaccgtaca 20432952  T
Q  416 tccagttaaaaatgaattatagataactacattgtctcttcccttcaatccatcatc 472  Q
    |||| ||||||||||||||||| | |||| |||||||||||||||||||| ||||||    
T  20432951 tccaattaaaaatgaattatagcttactagattgtctcttcccttcaatcgatcatc 20432895  T

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Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 20401114 - 20400815
Alignment:
Q  18 gtatagagatgagaatggatggcgtttggtcccaactgaaaatgatccctttagggttgtatttattgatgctactgaatctgaaaaagctatagtttga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  20401114 gtatagagatgagaatggatggcgtttggtcccaactgaaaatgatccctttagggttgtatttgttgatgctactgaatctgaaaaagctgtagtttga 20401015  T
Q  118 atcaaatttccaagctagggttactgaataatatttatgtaataatcatagctctattaa-ggttgtgcatcttacaagcccccctataaagagcttgtg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20401014 atcaaatttccaagctagggttactgaataatatttatgtaataaaaatagctctattaagggttgtgcatcttacaagcccccctataaagagcttgtg 20400915  T
Q  217 taaataagtcttttggtcttaaagatatttgaaatttagttatgttcattgaattttggctt-atttttctgttattccaattatatccttaggtaaatt 315  Q
    ||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||||| || |  ||| |||||||||||||||||||||| |||||||    
T  20400914 taaataagtctttagttcttaaagatatttgaatttgggttatgttcattgaattttgggttgacatttttgttattccaattatatccttaagtaaatt 20400815  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 472
Target Start/End: Complemental strand, 20400528 - 20400438
Alignment:
Q  384 tctttcacaccataatgtctcttcaccgtgcat--ccagttaaaaatgaattatagataactacattgtctcttcccttcaatccatcatc 472  Q
    |||||||||||| |||||||||||   || |||  ||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||    
T  20400528 tctttcacaccacaatgtctcttctatgtacatatccagttaaaaatgaactataggtaactagattgtctcttcccttccatccatcatc 20400438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 20400588 - 20400548
Alignment:
Q  320 tataataatattatactgttcgtgttattaaatacataaaa 360  Q
    ||||| ||| ||||| |||||||||||||||||||||||||    
T  20400588 tataaaaatgttatattgttcgtgttattaaatacataaaa 20400548  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 3584111 - 3584181
Alignment:
Q  281 ttttctgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||| ||||||||||||||||  |||| | |||||||||||||||||||||||| |||| |||||||||||    
T  3584111 ttttttgttattccaattatacgcttaagcaaattttcttataataatattatattgttggtgttattaaa 3584181  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 13703282 - 13703347
Alignment:
Q  286 tgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||||| |||| || ||||||||    
T  13703282 tgttattccaattatatccttaaacaaattttcttataataatcttatattgttagttttattaaa 13703347  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 13640901 - 13640966
Alignment:
Q  286 tgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    ||||||||||||||||||| ||   ||||||| |||||||||| ||||| |||| || ||||||||    
T  13640901 tgttattccaattatatccctaaacaaattttgttataataatgttatattgttggttttattaaa 13640966  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 31177394 - 31177354
Alignment:
Q  311 aaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||||||||||||||||| |||||| ||| |||||||||||    
T  31177394 aaattttcttataataatgttataccgttggtgttattaaa 31177354  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 4815856 - 4815926
Alignment:
Q  281 ttttctgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||| |||||||||||||||| ||||| | |||||||| ||||||||| ||||| |||| |||||||||||    
T  4815856 ttttttgttattccaattatacccttaagcaaattttcgtataataatgttatattgttggtgttattaaa 4815926  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 10981723 - 10981670
Alignment:
Q  281 ttttctgttattccaattatatccttaggtaaattttcttataataatattata 334  Q
    |||| |||||||||||||||| |||||   |||||||||||||||||| |||||    
T  10981723 ttttttgttattccaattatacccttaaacaaattttcttataataatgttata 10981670  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 12294320 - 12294360
Alignment:
Q  311 aaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||||||| ||||||||||||||| |||| |||||||||||    
T  12294320 aaattttcatataataatattatattgttggtgttattaaa 12294360  T

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Target: scaffold0259 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 477
Target Start/End: Original strand, 18310 - 18403
Alignment:
Q  384 tctttcacaccataatgtctcttcaccgtgcatccagttaaaaatgaattatagataactacattgtctcttcccttcaatccatcatcatatt 477  Q
    |||||||||||| | |  ||||| |||||||||||||||  ||||||| | ||  |||||| ||||||| |||| |||||||||||||||||||    
T  18310 tctttcacaccacactacctctttaccgtgcatccagtttgaaatgaactctacctaactagattgtctattcctttcaatccatcatcatatt 18403  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 11067192 - 11067121
Alignment:
Q  280 tttttctgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    ||||| ||||||||||||||||||||||  |||| ||| | |||||||| ||||| |||| |||||||||||    
T  11067192 tttttttgttattccaattatatccttaaataaaatttttaataataatgttatattgttggtgttattaaa 11067121  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 40780780 - 40780843
Alignment:
Q  288 ttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||||||||||| ||| |||  ||||||||  ||||||||||||||| |||| |||||||||||    
T  40780780 ttattccaattacatctttaaataaatttttctataataatattatattgttggtgttattaaa 40780843  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 468
Target Start/End: Complemental strand, 21243167 - 21243082
Alignment:
Q  384 tctttcacaccat-aatgtctcttcaccgtgcatccagttaaaaatgaattatagataactacattgtctcttcccttcaatccat 468  Q
    ||||||||||||  |||| || |||||| | |||||  || |||||||| ||||  |||||| |||||||||||||||||||||||    
T  21243167 tctttcacaccaccaatgccttttcaccatacatcccatttaaaatgaactatacctaactagattgtctcttcccttcaatccat 21243082  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 15883242 - 15883282
Alignment:
Q  311 aaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||||||||||||||||||||||| |||| |||| ||||||    
T  15883242 aaattttcttataataatattatattgtttgtgtcattaaa 15883282  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 15920032 - 15920102
Alignment:
Q  281 ttttctgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||| |||||||| ||||||| |||||   |||||||||||||||||| ||||| |||| |||||||||||    
T  15920032 ttttttgttattctaattatacccttaaacaaattttcttataataatgttatattgttggtgttattaaa 15920102  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 16936360 - 16936405
Alignment:
Q  288 ttattccaattatatccttaggtaaattttcttataataatattat 333  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||    
T  16936360 ttattccaattatacccttaaataaattttcttataataatattat 16936405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 6235022 - 6235092
Alignment:
Q  281 ttttctgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||| ||||||| ||| |||| |||||   |||||||| |||||||||||||||||||| || ||||||||    
T  6235022 ttttttgttatttcaaatatacccttaaacaaattttcatataataatattatactgttggtattattaaa 6235092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 26575444 - 26575358
Alignment:
Q  384 tctttcacaccataatgtctcttcaccgtgcatccagttaaaaatgaattatagataactacattgtctcttcccttcaatccatca 470  Q
    |||||||||||| | || ||||| ||||| |||| |||| |||||||| ||||  |||||| ||||||| ||||||| | |||||||    
T  26575444 tctttcacaccacactgcctcttgaccgtacatcgagttcaaaatgaactatacctaactagattgtctgttccctttattccatca 26575358  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 14690202 - 14690132
Alignment:
Q  281 ttttctgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    ||||||||||||||||||||| |||||   | |||||| ||||||||| ||||| |||| |||||||||||    
T  14690202 ttttctgttattccaattatacccttaaacatattttcctataataatgttatattgttggtgttattaaa 14690132  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 472
Target Start/End: Original strand, 24473468 - 24473556
Alignment:
Q  384 tctttcacaccataatgtctcttcaccgtgcatccagttaaaaatgaattatagataactacattgtctcttcccttcaatccatcatc 472  Q
    |||||||||||| | |  ||||||||||| ||||| | | |||||| ||||||  ||||||  ||||||||| ||||||||||||||||    
T  24473468 tctttcacaccacactacctcttcaccgtacatcccgctcaaaatggattatacctaactaggttgtctctttccttcaatccatcatc 24473556  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 33133753 - 33133693
Alignment:
Q  288 ttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttatt 348  Q
    ||||||||||||||||||||  ||||||||  |||||||||||| || |||| ||||||||    
T  33133753 ttattccaattatatccttaaataaatttttctataataatattttattgttggtgttatt 33133693  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 20110955 - 20111025
Alignment:
Q  281 ttttctgttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||| ||||||| |||||||| |||||  ||||||||  ||||||||||||||| |||| | |||||||||    
T  20110955 ttttttgttatttcaattatacccttaaataaatttttatataataatattatattgttggagttattaaa 20111025  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 96990 - 97054
Alignment:
Q  287 gttattccaattatatccttaggtaaattttcttataataatattatactgttcgtgttattaaa 351  Q
    |||||| |||||||| |||||   ||||||| |||||||||||||||| |||| |||| ||||||    
T  96990 gttatttcaattatacccttaaacaaatttttttataataatattatattgttggtgtgattaaa 97054  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 22354801 - 22354749
Alignment:
Q  294 caattatatccttaggtaaattttcttataataatattatactgttcgtgtta 346  Q
    ||||||||||||||  |||||||| |||||||||| ||||| |||| ||||||    
T  22354801 caattatatccttaaataaattttattataataatgttatattgttggtgtta 22354749  T

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